Groel

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASP-188   VAL-189  12.4 10.2 -4.9 15.0 59.8 66.8 -6.2
 VAL-189   VAL-190  15.7 13.3 -3.0 24.2 117.8 119.4 61.0
 VAL-190   GLU-191  18.8 16.6 17.0 -22.8 120.4 107.4 18.6
 GLY-192   MET-193  21.3 21.2 -5.2 2.7 54.0 58.0 8.4
 MET-193   GLN-194  21.9 21.9 -15.8 20.1 18.1 17.0 -29.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LYS-371   LEU-372  21.9 21.8 11.8 -10.4 146.0 142.6 12.3
 LEU-372   ALA-373  23.3 23.4 36.4 -26.5 137.1 139.4 -40.4
 GLY-374   GLY-375  23.2 20.4 -8.7 12.6 77.0 78.4 10.6
 GLY-375   VAL-376  21.3 19.0 25.9 -22.2 45.6 38.6 25.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees