Adenylate Kinase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 HIS-44   LEU-45  1.1 2.8 1.1 0.9 127.2 117.9 5.6
 LEU-45   ALA-46  1.4 1.7 -12.5 8.1 62.0 51.6 5.9
 ALA-46   THR-47  3.9 5.4 -6.7 -17.9 61.8 68.9 37.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ILE-84   GLU-85  6.4 5.1 -13.0 1.2 82.5 82.1 2.8
 GLU-85   LYS-86  9.6 7.6 7.9 -4.8 138.5 140.2 -1.0
 LYS-86   ASN-87  11.7 9.7 -3.5 1.1 27.2 32.8 -3.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees