Glutamate Receptor Subunit 2

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 SER-108   LEU-109  2.5 2.6 -13.5 -0.6 15.2 17.7 56.2
 LEU-109   GLY-110  1.1 1.0 15.7 -0.1 90.6 93.7 10.5
 GLY-110   ILE-111  3.3 3.3 -7.3 4.3 15.1 17.6 14.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 SER-194   THR-195  0.5 0.8 -4.7 -0.7 94.7 93.7 -17.9
 THR-195   MET-196  4.3 4.3 12.0 -8.8 26.8 32.3 8.1
 MET-196   ASN-197  5.4 5.7 12.7 -6.9 43.1 40.4 40.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLU-201   GLN-202  6.5 6.7 4.5 -1.6 97.8 96.4 -10.3
 GLN-202   ARG-203  10.2 10.4 -0.7 -4.0 56.5 50.8 32.2
 ARG-203   LYS-204  10.8 10.8 -1.2 7.6 14.1 18.6 -60.6
 LYS-204   PRO-205  11.3 11.2 1.9 -10.2 104.3 108.6 26.1
 PRO-205   CYS-206  9.5 9.5 12.4 -3.4 71.6 66.0 34.3
 CYS-206   ASP-207  8.5 8.6 5.5 -0.7 115.3 115.7 -24.3
 ASP-207   THR-208  5.2 5.4 0.4 1.2 53.1 54.8 18.3
 THR-208   MET-209  3.2 3.2 -2.7 -3.6 129.6 135.9 -16.4
 MET-209   LYS-210  4.5 4.2 18.9 -10.3 42.8 50.3 26.5
 LYS-210   VAL-211  4.2 4.1 5.0 8.5 83.1 88.9 15.7
 VAL-211   GLY-212  7.1 7.2 -7.3 -4.6 140.9 142.2 -56.0
 GLY-212   GLY-213  9.1 9.4 15.2 -8.8 28.4 34.8 39.0
 GLY-213   ASN-214  8.5 8.4 15.0 -17.0 80.4 82.6 -6.0
 ASN-214   LEU-215  6.0 6.2 12.8 0.8 73.6 69.9 25.6
 LEU-215   ASP-216  8.6 8.8 7.6 -7.3 22.8 15.1 7.5
 ASP-216   SER-217  7.5 7.6 -8.7 2.1 112.7 110.6 -3.5
 SER-217   LYS-218  4.6 4.8 -12.9 -9.4 113.9 126.1 -119.9
 LYS-218   GLY-219  4.5 4.1 8.6 4.4 77.4 90.2 22.2
 GLY-219   TYR-220  4.5 4.3 14.4 -6.1 95.8 94.3 -2.6
 TYR-220   GLY-221  7.8 7.8 -4.2 10.4 154.2 150.7 40.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees