Glutamate Receptor, Ionotropic Kainate 1

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ILE-110   SER-111  11.1 11.1 -1.3 1.8 99.4 97.9 -77.8
 SER-111   ILE-112  12.6 12.3 -3.8 5.4 173.2 170.8 9.9
 ILE-112   LEU-113  13.6 13.7 2.6 -10.5 60.0 59.8 -68.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-210   ILE-211  13.3 13.1 0.3 -12.0 74.1 76.3 -35.2
 ILE-211   ASP-212  15.2 15.2 0.9 5.0 38.9 48.5 87.0
 ASP-212   SER-213  13.2 13.4 5.5 2.7 72.5 71.2 2.7
 SER-213   LYS-214  10.0 10.1 17.1 -4.0 81.8 90.7 99.3
 LYS-214   GLY-215  8.2 8.3 -19.6 24.3 79.5 89.4 -75.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees