Glycerol Kinase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ALA-262   LYS-263  5.4 5.9 -9.1 -15.7 32.5 27.3 91.9
 LYS-263   ASN-264  3.4 3.6 26.5 -1.5 74.8 76.5 65.8
 ASN-264   THR-265  1.1 1.2 14.6 -22.2 138.6 134.0 -5.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASN-270   PHE-271  7.6 7.7 -16.1 -7.2 43.1 45.4 118.2
 PHE-271   LEU-272  5.8 5.7 -13.3 13.7 97.8 95.2 -9.7
 LEU-272   LEU-273  2.3 2.3 2.4 -18.2 128.3 137.6 31.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-304   GLU-305  4.7 4.9 3.4 -19.7 136.4 141.1 43.1
 GLU-305   GLY-306  4.4 4.1 11.4 9.5 71.9 75.4 16.4
 GLY-306   SER-307  4.0 3.8 -30.9 25.9 42.9 51.9 20.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PHE-346   VAL-347  20.2 21.1 15.2 -21.0 144.3 135.7 2.2
 VAL-347   PRO-348  19.2 19.5 19.7 -19.6 83.6 86.1 -34.9
 PRO-348   ALA-349  17.6 18.2 -99.5 -31.7 30.8 40.7 457.0
 ALA-349   PHE-350  18.2 18.5 -87.1 -129.3 108.8 86.4 89.5
 ALA-349   PHE-350  18.2 18.5 -87.1 -129.3 108.8 86.4 89.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ALA-349   PHE-350  18.2 18.5 -87.1 -129.3 108.8 86.4 89.5
 ALA-349   PHE-350  18.2 18.5 -87.1 -129.3 108.8 86.4 89.5
 PHE-350   SER-351  15.4 20.7 -46.7 -50.6 81.8 127.5 -135.1
 SER-351   GLY-352  14.1 19.4 66.8 160.3 29.6 36.8 785.2
 GLY-352   LEU-353  14.3 18.1 127.8 -36.0 63.8 108.7 -141.1
 LEU-353   PHE-354  10.7 14.9 -0.5 -162.7 151.3 89.3 -409.6
 PHE-354   ALA-355  9.8 12.2 72.1 -125.4 58.4 86.6 -135.7
 ALA-355   PRO-356  12.5 8.9 -24.5 -1.8 74.3 69.2 27.7
 PRO-356   TYR-357  14.5 7.8 43.4 12.3 59.4 52.4 143.3
 TYR-357   TRP-358  13.9 11.4 -4.2 -17.8 78.2 119.7 5.1
 TRP-358   ARG-359  11.1 12.1 38.7 -9.2 92.5 68.1 56.3
 ARG-359   PRO-360  14.0 15.8 7.7 -12.3 152.4 122.4 24.6
 PRO-360   ASP-361  14.8 18.2 -134.5 13.3 93.1 93.3 -8.2
 ASP-361   ALA-362  18.5 21.2 -167.6 6.4 18.8 50.1 640.0
 ALA-362   ARG-363  20.6 20.5 145.9 -20.1 113.9 146.6 -306.3
 ARG-363   GLY-364  22.6 22.6 28.8 52.7 108.9 136.2 -213.0
 GLY-364   ALA-365  21.7 22.1 -22.2 -8.9 77.8 87.2 18.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PRO-435   LYS-436  5.5 4.2 24.2 -18.8 23.5 33.1 22.7
 LYS-436   VAL-437  6.1 4.4 -1.0 -7.9 91.1 79.8 16.5
 VAL-437   ALA-438  7.6 6.6 -7.6 -22.1 43.3 24.4 98.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 TRP-466   ALA-467  13.6 10.9 5.5 -31.5 125.0 104.8 59.9
 ALA-467   GLU-468  11.1 9.2 -5.4 36.3 107.2 92.7 46.8
 GLU-468   ASP-469  8.3 7.0 -40.2 6.1 37.1 28.0 91.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLU-497   TRP-498  22.9 22.1 77.5 -3.0 81.4 71.6 89.4
 TRP-498   VAL-499  25.9 25.0 -8.3 -5.3 83.6 66.2 25.2
 VAL-499   ASP-500  24.3 25.6 -167.4 -33.2 20.3 10.0 -634.4
 ASP-500   GLU-501  23.7 27.4 148.6 -16.7 110.4 118.9 773.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees