Siderophore Periplasmic Binding Protein

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PHE-189   ASP-190  13.4 13.5 -8.8 2.8 106.7 102.9 57.8
 ASP-190   GLY-191  14.3 14.4 -21.2 6.1 156.0 150.6 -331.4
 GLY-191   ALA-192  14.5 14.7 4.9 8.7 43.0 38.2 455.7
 ALA-192   GLY-193  13.1 13.0 -17.5 11.7 103.9 101.4 -11.2
 GLY-193   SER-194  9.8 9.6 5.5 -7.1 119.2 117.4 -71.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-196   ARG-197  10.0 10.0 -0.7 1.7 94.5 94.5 -5.7
 ARG-197   ASN-198  7.2 7.2 5.7 -3.6 22.2 23.8 -50.7
 ASN-198   MET-199  6.5 6.5 -6.3 10.3 117.3 113.5 40.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ARG-219   PHE-220  7.8 7.8 -7.3 6.2 116.3 114.1 44.0
 PHE-220   GLU-221  4.1 4.2 3.6 -5.0 108.0 109.1 -69.6
 GLU-221   GLU-222  5.4 5.4 0.4 -6.7 66.2 65.7 -80.6
 GLU-222   ARG-223  8.7 8.9 5.1 4.0 20.7 18.7 118.7
 ARG-223   VAL-224  7.6 7.8 -7.9 7.1 98.5 95.7 22.3
 VAL-224   GLU-225  6.8 6.9 4.7 -8.9 95.7 97.6 -52.3
 GLU-225   GLU-226  10.4 10.5 -4.0 8.9 36.1 38.6 -39.0
 GLU-225   GLU-226  10.4 10.5 -4.0 8.9 36.1 38.6 -39.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLU-225   GLU-226  10.4 10.5 -4.0 8.9 36.1 38.6 -39.0
 GLU-225   GLU-226  10.4 10.5 -4.0 8.9 36.1 38.6 -39.0
 GLU-226   ILE-227  11.6 11.8 -6.3 4.1 37.2 38.5 -14.8
 ILE-227   SER-228  9.9 10.1 -4.4 9.9 95.4 95.9 -46.6
 SER-228   THR-229  11.6 11.7 -8.3 -5.0 78.3 78.2 201.1
 THR-229   ALA-230  14.9 15.1 10.3 -4.9 161.6 155.9 -101.9
 ALA-230   TYR-231  14.6 14.9 8.4 -5.1 135.2 139.0 -41.9
 TYR-231   ALA-232  13.6 13.7 -10.7 11.3 110.8 105.5 -49.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ALA-341   ARG-342  7.6 7.8 43.9 -13.5 29.5 30.6 527.2
 ARG-342   THR-343  10.1 10.2 4.8 -8.0 51.8 50.3 -21.6
 THR-343   TYR-344  8.4 8.4 -1.5 -0.8 77.7 74.3 -28.4
 TYR-344   ALA-345  5.5 5.6 -6.1 15.1 33.0 35.7 -98.2
 ALA-345   GLN-346  7.7 7.9 -8.4 5.6 37.3 40.9 81.9
 GLN-346   ALA-347  7.0 7.1 0.6 -8.6 95.0 96.3 115.3
 ALA-347   ASN-348  3.6 3.5 9.8 -5.5 114.5 116.2 -99.5
 ASN-348   ILE-349  3.8 3.9 0.2 -0.7 172.6 174.2 61.5
 ILE-349   VAL-350  4.7 4.6 -1.8 5.3 66.0 69.5 -132.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees