Large Fragment Of DNA Polymerase I

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASP-625   GLU-626  13.5 13.5 -34.7 19.3 12.5 9.8 26.5
 GLU-626   ASN-627  13.8 14.4 9.0 -13.8 108.1 113.3 6.0
 ASN-627   LEU-628  11.4 12.2 15.5 -8.7 85.6 80.8 0.4
 LEU-628   ILE-629  8.6 9.1 -13.1 13.5 54.0 54.6 -9.4
 ILE-629   ARG-630  10.3 10.1 -8.3 12.8 22.5 16.7 -6.2
 ARG-630   VAL-631  9.5 9.9 -5.8 -8.3 87.5 82.1 2.8
 VAL-631   PHE-632  5.9 6.3 7.5 3.8 110.4 95.8 -0.7
 PHE-632   GLN-633  6.1 6.1 -9.5 -1.0 28.0 34.3 16.3
 GLN-633   GLU-634  8.3 8.6 -25.9 41.0 44.2 34.5 -20.6
 GLU-634   GLY-635  5.3 6.5 -3.4 -6.3 92.6 85.0 2.9
 GLY-635   ARG-636  3.5 4.4 12.2 -20.2 62.9 82.3 1.1
 ARG-636   ASP-637  0.8 1.7 2.2 45.4 36.6 31.2 66.7
 ASP-637   ILE-638  1.8 1.3 -10.7 30.5 129.1 136.5 23.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-669   LEU-670  5.0 5.0 1.0 14.3 89.8 106.1 -2.2
 LEU-670   TYR-671  3.8 3.3 11.4 -47.5 156.1 169.3 64.4
 TYR-671   GLY-672  2.8 2.7 1.4 -43.1 140.5 115.8 47.2
 GLY-672   MET-673  4.9 5.0 57.2 -21.5 104.2 111.3 -15.5
 MET-673   SER-674  5.7 5.4 -17.5 20.2 83.1 81.9 -0.9
 SER-674   ALA-675  9.2 8.8 -9.1 3.6 123.4 119.5 -7.9
 ALA-675   HIS-676  12.5 12.0 5.5 -7.9 110.9 112.1 4.5
 HIS-676   ARG-677  13.7 13.0 2.1 4.4 74.7 74.6 9.5
 ARG-677   LEU-678  11.4 10.3 24.4 -29.7 9.4 12.4 -11.2
 LEU-678   SER-679  11.3 11.1 19.1 -4.8 74.1 82.9 7.1
 SER-679   GLN-680  15.1 14.8 -4.7 8.5 69.1 76.0 0.8
 GLN-680   GLU-681  15.7 14.7 -48.5 41.6 117.7 138.2 -3.0
 GLU-681   LEU-682  13.8 12.7 -33.1 5.8 155.0 144.9 -41.9
 LEU-682   ALA-683  14.8 13.7 144.9 -126.4 93.9 105.1 6.7
 ALA-683   ILE-684  18.2 17.4 38.7 -28.9 57.6 78.3 15.7
 ILE-684   PRO-685  18.6 17.9 -7.3 -26.9 46.9 26.1 48.2
 PRO-685   TYR-686  20.2 19.5 14.6 -23.7 108.4 107.5 10.4
 TYR-686   GLU-687  18.1 18.2 84.0 -78.6 56.4 75.0 -4.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees