Glutamate Receptor 2

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 MET-104   SER-105  7.3 7.5 -1.5 8.2 55.2 55.8 -9.3
 SER-105   LEU-106  4.2 4.4 14.4 -7.0 53.6 52.4 24.7
 LEU-106   GLY-107  0.6 0.8 -10.6 -14.5 54.7 53.1 65.7
 GLY-107   ILE-108  3.0 2.9 2.6 8.5 49.7 52.5 21.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-212   ASP-213  8.8 8.4 -5.2 5.1 143.2 139.7 2.1
 ASP-213   SER-214  5.7 5.3 2.4 2.9 106.0 104.9 -4.8
 SER-214   LYS-215  2.0 1.6 0.4 20.8 73.5 84.3 27.0
 LYS-215   GLY-216  2.3 2.5 -13.8 -8.2 50.5 66.2 43.2
 GLY-216   TYR-217  5.1 5.1 -20.0 3.9 71.7 71.6 10.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees