Nitrate/nitrite Response Regulator Protein Narl

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ILE-45   GLU-46  3.8 8.0 -159.2 12.7 35.9 82.6 -190.1
 GLU-46   LEU-47  3.9 6.5 -2.6 9.1 92.6 135.1 -0.2
 LEU-47   ALA-48  7.4 3.6 -5.0 -0.4 134.6 154.9 -7.2
 ALA-48   GLU-49  6.7 5.6 11.3 -8.5 109.7 85.3 10.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-64   MET-65  16.8 8.4 -38.9 -111.1 41.0 126.4 29.3
 MET-65   ASN-66  15.1 8.2 -80.3 45.4 101.9 124.3 -25.1
 ASN-66   GLY-67  11.8 11.8 -59.5 -7.6 83.1 135.6 -62.2
 GLY-67   LEU-68  9.8 11.5 -0.9 -17.8 69.8 143.1 -0.6
 LEU-68   GLU-69  7.5 8.3 12.1 138.5 48.4 70.4 74.6
 GLU-69   THR-70  7.7 10.0 91.3 -74.2 52.0 90.8 17.0
 THR-70   LEU-71  5.9 7.8 -164.8 -1.6 64.9 18.4 126.4
 LEU-71   ASP-72  3.3 8.8 -148.9 -11.3 83.3 133.1 230.3
 LEU-71   ASP-72  3.3 8.8 -148.9 -11.3 83.3 133.1 230.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-71   ASP-72  3.3 8.8 -148.9 -11.3 83.3 133.1 230.3
 LEU-71   ASP-72  3.3 8.8 -148.9 -11.3 83.3 133.1 230.3
 ASP-72   LYS-73  3.7 7.2 15.5 10.8 155.3 83.2 -3.2
 LYS-73   LEU-74  3.2 7.0 -23.6 14.0 78.5 55.2 4.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ARG-75   GLU-76  2.7 2.5 -38.7 28.1 119.1 44.8 13.8
 GLU-76   LYS-77  4.8 2.1 -1.3 5.5 133.8 108.2 3.3
 LYS-77   SER-78  4.5 4.1 148.0 31.6 115.8 68.2 0.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees