Adenylate Kinase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 SER-30   THR-31  3.8 4.1 -34.8 -9.6 53.1 53.8 56.5
 SER-30   THR-31  3.8 4.1 -34.8 -9.6 53.1 53.8 56.5
 THR-31   GLY-32  1.8 2.2 3.6 3.5 73.9 89.2 2.8
 GLY-32   ASP-33  3.6 4.8 -6.1 6.2 131.3 136.7 -3.7
 ASP-33   MET-34  1.9 3.7 3.5 1.8 114.3 105.3 8.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-59   THR-60  4.8 4.5 23.4 23.3 53.9 56.3 67.1
 THR-60   ASP-61  2.2 1.8 -13.6 -5.6 65.1 67.2 16.6
 ASP-61   GLU-62  1.7 2.1 -1.5 -3.2 86.2 78.9 4.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees