Gdp-Mannose-Dependent Alpha-(1-2)-Phosphatidylinositol Mannosyltransferase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ALA-115   THR-116  18.5 16.5 1.0 -11.9 141.5 134.5 6.9
 THR-116   PHE-117  21.5 19.7 -5.4 -8.5 93.2 95.0 2.7
 PHE-117   HIS-118  21.9 20.4 25.6 -26.0 112.8 119.3 0.0
 HIS-118   THR-119  25.7 24.1 -129.6 -57.2 61.0 59.9 -73.7
 THR-119   SER-120  26.3 26.3 4.0 103.1 121.2 90.3 182.7
 SER-120   THR-121  25.0 29.9 -164.1 17.6 64.7 48.1 -155.6
 THR-121   THR-122  26.7 29.8 -114.6 54.8 31.5 109.5 38.3
 THR-122   LYS-123  24.3 30.3 -162.2 -63.5 90.4 88.4 -10.1
 LYS-123   SER-124  20.9 26.6 -147.6 -90.1 130.2 136.2 63.7
 SER-124   LEU-125  21.8 23.8 -140.7 -39.8 166.5 69.3 -105.7
 LEU-125   THR-126  22.2 20.0 138.2 -32.3 77.6 41.5 49.9
 THR-126   LEU-127  19.2 18.9 -174.5 -104.3 90.8 71.8 -15.4
 LEU-127   SER-128  16.7 15.4 -143.1 -61.0 147.9 144.4 133.3
 SER-128   VAL-129  18.3 13.4 -157.7 -84.0 154.5 94.2 -154.7
 VAL-129   PHE-130  18.0 10.1 -175.3 -19.8 91.7 133.6 58.7
 PHE-130   GLN-131  14.5 9.6 157.4 -19.8 89.8 60.4 34.5
 GLN-131   GLY-132  13.4 7.3 149.0 164.9 40.9 56.0 -46.8
 GLY-132   ILE-133  15.5 5.2 -48.1 10.8 142.1 61.4 -1.4
 ILE-133   LEU-134  14.5 6.1 145.7 6.4 69.2 88.7 14.4
 LEU-134   ARG-135  13.6 9.6 -14.6 12.9 57.6 115.0 -1.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLU-157   ALA-158  12.3 10.1 12.4 -19.6 142.7 47.4 0.4
 ALA-158   LEU-159  12.8 11.7 54.2 25.9 114.3 112.2 -76.1
 LEU-159   GLY-160  9.6 12.1 148.0 37.3 59.1 82.9 100.3
 GLY-160   SER-161  7.6 11.7 120.9 39.1 101.6 21.6 108.1
 SER-161   ASP-162  8.8 12.9 48.3 -101.9 83.4 76.5 -41.6
 ASP-162   ALA-163  12.1 12.1 -22.6 170.7 49.8 101.9 -2.1
 ALA-163   VAL-164  15.3 14.9 -97.3 45.1 121.4 120.2 -18.7
 VAL-164   GLU-165  18.8 18.1 -13.4 -1.3 85.0 83.9 0.3
 GLU-165   ILE-166  22.1 21.1 -6.3 13.6 72.7 83.7 -11.5
 ILE-166   PRO-167  25.1 24.2 23.4 -2.6 104.7 98.1 -2.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees