Dynamin-1

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASP-30   LEU-31  8.4 7.0 -18.2 35.6 133.6 95.9 10.0
 ASP-30   LEU-31  8.4 7.0 -18.2 35.6 133.6 95.9 10.0
 GLY-24   GLN-25  11.8 14.2 -3.1 -6.2 54.1 28.1 23.3
 GLN-25   ASN-26  13.0 13.7 127.4 -16.6 81.1 93.2 52.5
 ASN-26   ALA-27  10.5 11.0 92.6 -83.5 142.2 82.1 2.6
 ALA-27   ASP-28  10.7 12.7 146.8 -64.3 87.1 33.9 310.0
 ASP-28   LEU-29  14.3 11.7 173.4 40.5 53.1 91.2 -176.4
 LEU-29   ASP-30  13.8 13.9 169.7 -155.0 104.2 119.7 -89.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLN-303   LEU-304  22.0 24.2 -2.6 -3.8 57.7 48.4 25.0
 LEU-304   LEU-305  24.7 26.4 -2.6 15.9 127.2 112.0 46.8
 LEU-305   SER-306  27.3 29.7 -2.9 7.5 122.9 117.2 25.8
 SER-306   ILE-307  24.8 29.3 -7.9 -4.9 60.1 50.4 29.8
 ILE-307   GLU-308  24.4 29.3 2.3 -1.9 101.0 126.0 17.6
 GLU-308   LYS-309  28.1 31.5 -2.5 -4.5 141.9 110.4 -21.4
 LYS-309   GLU-310  28.9 34.4 8.7 -19.3 83.2 84.7 -18.8
 GLU-310   VAL-311  26.5 34.1 31.0 18.6 124.9 151.4 -190.6
 GLU-312   GLU-313  31.7 29.6 49.7 136.6 38.9 165.5 279.0
 GLU-313   TYR-314  30.5 29.8 36.6 -12.1 104.1 107.0 -136.5
 LEU-729   ARG-730  24.3 27.3 14.0 8.8 122.0 115.7 -37.8
 TYR-732   HIS-733  23.3 25.7 1.3 -6.6 152.3 143.8 26.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees