D-Ribose-Binding Protein

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 HIS-100   ILE-101  4.6 4.5 3.4 -4.4 159.0 158.2 2.8
 ILE-101   ALA-102  5.4 5.1 -0.3 -17.4 52.6 53.1 31.4
 ALA-102   SER-103  2.7 2.2 -10.1 -9.1 39.0 51.2 48.3
 SER-103   ASP-104  2.3 1.9 7.9 0.3 74.2 65.7 13.3
 ASP-104   ASN-105  5.3 5.0 11.7 -12.0 115.6 114.9 6.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 THR-232   ILE-233  5.3 5.3 -15.1 18.0 61.9 62.5 6.7
 ILE-233   ALA-234  3.5 3.5 -0.8 13.9 72.6 73.7 -5.5
 ALA-234   GLN-235  0.5 0.8 -2.0 -23.7 36.6 27.8 62.1
 GLN-235   LEU-236  1.9 2.1 7.9 5.3 77.3 80.3 7.7
 LEU-236   PRO-237  5.5 5.8 -5.9 5.3 35.6 45.0 -1.8
 PRO-237   ASP-238  7.2 7.6 -7.6 -0.4 77.6 77.9 9.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PRO-262   VAL-263  6.8 6.8 29.9 -45.2 147.4 144.6 39.1
 VAL-263   ASP-264  6.7 6.1 -5.3 -5.7 34.4 45.5 12.2
 ASP-264   LEU-265  7.4 6.3 -10.2 35.7 56.2 58.4 -58.0
 LEU-265   LYS-266  4.8 4.0 -10.4 -20.6 25.4 24.4 92.8
 LYS-266   LEU-267  4.8 4.3 -17.5 8.7 61.6 59.5 32.8
 LEU-267   VAL-268  5.1 4.7 6.4 -9.8 144.3 146.6 7.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees