Glutamate Receptor Subunit 2

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-109   GLY-110  2.2 2.0 11.1 12.1 69.8 72.2 55.2
 GLY-110   ILE-111  4.0 3.9 -6.3 -8.0 35.7 33.9 74.3
 ILE-111   SER-112  7.0 6.9 3.9 3.2 116.1 120.1 -32.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLU-193   SER-194  5.7 5.7 -0.9 9.1 117.3 118.7 19.1
 SER-194   THR-195  2.0 2.1 -5.0 10.9 115.6 115.1 3.2
 THR-195   MET-196  3.4 3.6 -10.3 8.9 159.2 160.5 -8.2
 MET-196   ASN-197  4.7 5.0 -1.7 1.3 52.8 52.6 12.6
 MET-196   ASN-197  4.7 5.0 -1.7 1.3 52.8 52.6 12.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 MET-196   ASN-197  4.7 5.0 -1.7 1.3 52.8 52.6 12.6
 MET-196   ASN-197  4.7 5.0 -1.7 1.3 52.8 52.6 12.6
 ASN-197   GLU-198  2.3 2.3 5.4 3.1 108.7 107.4 -41.8
 GLU-198   TYR-199  1.6 1.7 -10.8 5.9 54.9 48.3 17.0
 TYR-199   ILE-200  4.2 4.4 -4.1 1.5 19.5 21.4 23.1
 ILE-200   GLU-201  2.7 2.9 -1.8 0.0 65.5 65.2 25.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-215   ASP-216  8.8 9.2 -3.0 4.6 29.4 23.6 -2.5
 ASP-216   SER-217  6.8 7.0 2.6 -6.8 91.8 92.8 13.4
 SER-217   LYS-218  3.5 3.5 -3.2 -23.2 77.4 65.3 99.3
 LYS-218   GLY-219  4.8 4.1 14.4 8.1 82.8 67.4 19.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 TRP-255   TYR-256  9.0 9.1 -6.8 -6.8 52.4 53.3 64.1
 TYR-256   ASP-257  10.6 10.6 2.3 21.5 124.8 121.9 -63.4
 ASP-257   LYS-258  14.1 14.2 -3.8 -12.7 37.8 12.4 113.1
 LYS-258   GLY-259  12.8 13.0 6.0 19.8 113.0 108.0 -44.5
 GLY-259   GLU-260  9.6 9.7 -18.6 10.1 5.8 8.5 52.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees