Putative Enzyme Ydif

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASP-201   GLU-202  17.5 17.6 -4.0 -5.9 14.2 16.7 201.8
 GLU-202   VAL-203  17.7 17.7 1.1 -4.1 108.0 108.7 -7.1
 TYR-205   LEU-206  15.7 15.5 0.4 -2.7 157.2 154.7 -89.9
 LEU-206   ASP-207  15.8 15.8 0.9 -2.1 104.7 102.6 122.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-271   ASP-272  10.3 10.2 3.1 -0.1 22.0 19.9 89.3
 ASP-272   PHE-273  10.3 10.3 1.9 -3.4 62.0 59.4 -11.1
 PHE-273   THR-274  9.8 9.7 4.2 -6.5 130.7 131.1 48.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LYS-301   GLY-302  12.9 12.9 5.2 14.1 88.1 83.3 -21.2
 GLY-302   ALA-303  9.9 10.0 -19.6 19.1 137.2 130.5 59.0
 ALA-303   VAL-304  7.8 7.9 -11.7 4.6 74.6 67.1 -147.3
 VAL-304   GLY-305  4.1 4.1 -2.5 4.9 45.1 43.8 0.7
 VAL-304   GLY-305  4.1 4.1 -2.5 4.9 45.1 43.8 0.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-304   GLY-305  4.1 4.1 -2.5 4.9 45.1 43.8 0.7
 VAL-304   GLY-305  4.1 4.1 -2.5 4.9 45.1 43.8 0.7
 GLY-305   ASN-306  4.7 4.8 -6.6 2.7 99.9 95.7 -65.6
 ASN-306   VAL-307  6.1 6.0 13.8 -22.3 111.8 113.6 132.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-310   ILE-311  17.6 17.7 -8.9 10.0 74.2 70.5 -38.4
 ILE-311   ALA-312  18.8 19.3 -8.5 -15.3 60.8 53.9 761.0
 ALA-312   ASP-313  15.7 16.5 23.3 -12.9 169.2 152.0 -317.8
 ASP-313   GLY-314  15.5 15.6 15.2 -22.3 136.6 151.8 -8.1
 GLY-314   ILE-315  17.6 17.4 21.5 -5.4 100.9 94.3 -195.3
 ILE-315   GLY-316  15.1 15.4 10.4 -4.8 159.7 155.5 -217.6
 GLY-316   LEU-317  13.7 13.8 8.8 -9.3 125.4 128.0 -37.6
 LEU-317   VAL-318  17.2 17.3 1.5 -1.3 76.7 75.6 -62.9
 VAL-318   ALA-319  18.5 18.7 7.6 -3.2 113.5 108.7 -78.5
 ALA-319   ARG-320  15.9 16.1 -3.7 5.6 10.7 12.9 -64.4
 ARG-320   GLU-321  16.6 16.7 0.7 -2.6 97.5 99.9 110.4
 GLU-321   GLU-322  20.3 20.5 -2.1 8.1 100.0 101.0 -162.9
 GLU-321   GLU-322  20.3 20.5 -2.1 8.1 100.0 101.0 -162.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLU-321   GLU-322  20.3 20.5 -2.1 8.1 100.0 101.0 -162.9
 GLU-321   GLU-322  20.3 20.5 -2.1 8.1 100.0 101.0 -162.9
 GLU-322   GLY-323  20.2 20.3 -1.4 -6.8 53.5 51.7 294.1
 GLY-323   CYS-324  18.2 18.3 12.1 -5.7 71.8 70.5 -52.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PHE-328   ILE-329  8.6 8.7 -0.4 -1.4 108.2 112.1 81.2
 ILE-329   LEU-330  5.3 5.3 -0.5 0.7 41.2 42.9 -20.0
 LEU-330   THR-331  5.6 5.5 -1.7 -2.5 104.3 104.5 16.2
 THR-331   VAL-332  4.7 4.5 9.7 -16.1 116.8 121.8 120.4
 VAL-332   GLU-333  8.0 7.8 4.9 -11.5 116.1 108.5 -144.8
 GLU-333   THR-334  8.9 8.7 8.4 1.3 61.1 61.3 161.2
 THR-334   GLY-335  11.7 11.6 -4.6 2.7 140.4 144.6 -103.4
 GLY-335   PRO-336  9.4 9.3 1.8 -1.9 44.9 47.1 58.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASN-352   THR-353  8.3 8.2 0.6 0.8 41.7 40.4 2.8
 THR-353   ARG-354  6.4 6.4 -2.1 1.3 68.5 68.1 35.1
 ARG-354   ALA-355  2.7 2.7 4.2 -4.9 85.7 84.8 6.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-370   LEU-371  4.1 4.1 -2.7 -4.8 98.5 98.0 -41.4
 LEU-371   ASP-372  1.5 1.6 1.0 5.6 116.9 118.6 -100.9
 ASP-372   VAL-373  5.2 5.2 4.2 -12.7 118.1 120.1 274.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-376   SER-377  11.0 11.2 -3.1 3.5 115.6 119.7 39.8
 SER-377   PHE-378  14.6 14.7 -6.2 4.9 162.6 159.1 -98.0
 PHE-378   ALA-379  15.3 15.2 -2.0 8.3 104.9 106.9 224.9
 ALA-379   GLU-380  18.3 18.2 -4.8 -3.4 23.6 26.4 282.1
 ALA-379   GLU-380  18.3 18.2 -4.8 -3.4 23.6 26.4 282.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ALA-379   GLU-380  18.3 18.2 -4.8 -3.4 23.6 26.4 282.1
 ALA-379   GLU-380  18.3 18.2 -4.8 -3.4 23.6 26.4 282.1
 GLU-380   VAL-381  17.0 17.0 -1.7 -0.7 81.4 80.2 -51.2
 VAL-381   ASP-382  14.5 14.4 -5.0 6.5 6.6 8.4 -95.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-387   GLY-388  11.4 11.4 -2.4 4.6 86.4 88.0 -115.6
 GLY-388   VAL-389  14.2 14.2 -0.2 -3.7 32.0 29.8 -178.3
 VAL-389   HIS-390  16.0 15.6 -6.0 -10.2 84.9 80.9 405.9
 HIS-390   LYS-391  17.2 17.1 9.8 4.5 64.9 69.2 254.0
 LYS-391   PHE-392  20.0 20.2 -5.0 30.1 104.1 94.4 45.0
 PHE-392   ASN-393  21.7 22.3 -25.3 -22.4 83.3 104.5 -245.3
 ASN-393   GLY-394  25.3 25.5 32.0 10.3 82.3 89.0 -7.0
 GLY-394   LYS-395  26.1 26.2 -43.3 29.8 36.3 39.6 125.8
 LYS-395   ILE-396  25.4 25.7 0.7 -1.9 99.0 99.8 -232.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 SER-409   LYS-410  1.1 1.1 -0.5 -6.0 65.3 63.2 288.3
 LYS-410   LYS-411  4.9 4.9 4.3 1.3 113.5 110.9 -111.7
 LYS-411   ILE-412  6.5 6.6 -4.2 3.0 93.0 92.3 -54.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLU-446   LEU-447  14.4 14.4 1.6 -3.9 133.7 128.5 36.6
 LEU-447   PRO-448  14.7 14.9 17.7 -16.2 63.9 61.2 106.5
 PRO-448   GLU-449  16.9 17.0 3.5 4.5 112.6 111.9 81.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ILE-456   ALA-457  1.0 1.0 0.1 2.6 41.7 40.8 -14.7
 ALA-457   LEU-458  1.6 1.6 -6.6 9.1 71.4 73.2 -36.5
 LEU-458   GLU-459  4.4 4.4 -5.6 1.7 81.3 84.2 -41.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PHE-524   VAL-525  22.2 22.3 -3.2 7.0 58.5 63.6 25.4
 VAL-525   LEU-526  21.0 20.8 1.0 4.5 57.3 48.8 376.4
 LEU-526   PRO-527  17.5 17.5 13.8 14.3 73.7 73.9 283.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees