Betaine Abc Transporter Permease And Substrate Binding Protein

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LYS-401   GLY-402  6.3 6.4 8.1 -24.8 104.2 101.8 16.5
 GLY-402   ALA-403  3.2 3.3 17.0 -18.0 129.2 136.4 2.9
 ALA-403   LYS-404  0.7 1.2 26.1 2.3 54.9 61.9 50.4
 LYS-404   VAL-405  3.1 3.1 -17.6 0.8 55.7 56.3 36.7
 VAL-405   GLY-406  6.8 6.8 -12.8 -4.3 114.9 111.0 -20.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 THR-504   MET-505  12.5 12.4 -1.1 -0.6 154.6 154.1 -8.1
 MET-505   GLY-506  10.7 10.6 1.7 2.5 98.8 95.7 -30.7
 GLY-506   THR-507  7.7 7.4 -26.1 -24.4 85.3 81.6 -10.7
 THR-507   SER-508  4.0 4.4 147.5 -55.8 37.9 82.0 165.8
 SER-508   GLU-509  1.2 1.6 -94.3 40.5 86.6 122.2 -8.0
 GLU-509   ASN-510  3.5 3.8 -24.3 -8.1 116.5 115.8 -29.4
 ASN-510   ILE-511  5.8 5.6 1.5 6.2 55.0 51.7 16.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees