Atp-Dependent RNA Helicase Ddx3x

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 GLY-406   ARG-407  23.4 23.8 -17.3 -6.5 171.1 168.8 -222.4
 ARG-407   VAL-408  23.3 23.1 14.7 44.6 73.8 80.8 179.5
 VAL-408   GLY-409  20.4 20.0 -18.8 89.6 155.0 99.4 370.7
 GLY-409   SER-410  18.6 17.3 -36.1 1.2 104.0 157.7 -325.3
 SER-410   THR-411  15.4 16.7 172.1 47.9 118.3 85.3 253.7
 THR-411   SER-412  14.4 13.4 -31.0 139.8 10.2 73.8 -934.6
 SER-412   GLU-413  13.9 12.4 78.4 -114.9 111.0 128.6 28.5
 GLU-413   ASN-414  16.5 14.9 123.9 167.7 168.6 137.0 501.8
 ASN-414   ILE-415  14.7 15.1 11.6 4.5 76.0 72.0 52.7
 ILE-415   THR-416  14.2 14.5 4.0 -4.8 59.1 61.0 -1.7
 THR-416   GLN-417  17.1 17.4 -7.3 4.8 138.1 135.6 -13.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 VAL-500   ALA-501  7.6 7.9 -3.6 6.7 143.5 147.0 15.7
 ALA-501   ALA-502  10.0 10.2 -3.6 8.2 147.7 142.9 34.3
 ALA-502   ARG-503  7.2 7.3 -9.4 1.2 92.1 96.6 -7.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 ASP-506   ILE-507  4.3 4.5 -8.8 8.3 73.2 78.2 -26.2
 ILE-507   SER-508  5.0 4.7 -8.4 40.2 64.2 66.9 -111.7
 SER-508   ASN-509  4.1 3.5 -48.1 -92.3 74.3 100.6 15.8
 ASN-509   VAL-510  6.6 5.6 74.8 15.2 53.0 105.9 241.5
 VAL-510   LYS-511  8.6 8.8 58.9 -8.3 88.7 90.0 14.4
 LYS-511   HIS-512  11.9 12.1 8.4 0.5 22.8 26.7 21.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees