Glutamate Receptor, Ionotropic Kainate 1

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PRO-104   PHE-105  10.4 10.2 -9.4 2.3 149.9 145.8 -57.6
 PHE-105   MET-106  11.2 11.4 5.2 4.7 57.0 56.5 35.8
 MET-106   THR-107  8.1 8.3 -10.1 -3.3 46.0 47.4 67.0
 THR-107   LEU-108  6.3 6.9 -3.1 -6.8 118.9 118.0 -87.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-109   ILE-110  4.1 4.4 8.4 4.9 69.5 64.2 52.3
 ILE-110   SER-111  5.5 5.7 -1.1 4.0 115.0 116.5 6.3
 SER-111   ILE-112  8.4 8.5 -3.6 6.6 116.4 118.0 7.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ILE-211   ASP-212  9.1 9.6 -3.0 8.0 134.2 139.7 54.7
 ASP-212   SER-213  6.4 6.8 -0.5 7.3 60.2 65.3 -22.4
 SER-213   LYS-214  5.5 5.8 5.5 -4.8 67.8 72.7 36.3
 LYS-214   GLY-215  3.7 3.8 -13.4 12.0 42.7 42.3 -5.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 TRP-251   ARG-252  4.7 4.7 -19.4 -3.0 147.2 148.2 -154.9
 ARG-252   GLY-253  6.2 5.8 -16.1 81.2 130.3 130.7 376.9
 GLY-253   ASN-254  4.3 3.0 9.6 -3.8 63.1 24.9 70.5
 ASN-254   GLY-255  5.5 3.4 16.9 33.1 122.5 83.1 -106.1
 GLY-255   CYS-256  6.4 6.3 -40.0 6.9 118.8 92.1 -48.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees