Glutamate Receptor Ionotropic, Nmda 1

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLN-144   GLY-145  4.4 5.0 11.8 7.4 52.6 57.4 51.9
 GLY-145   LEU-146  1.0 1.4 -0.2 -7.4 55.6 58.6 12.9
 LEU-146   THR-147  2.8 2.3 -5.7 0.8 57.8 59.8 9.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 THR-240   THR-241  6.2 6.3 0.2 7.9 108.6 110.5 -7.2
 THR-241   GLY-242  9.4 9.3 -6.1 -5.1 2.6 7.8 40.9
 GLY-242   GLU-243  10.6 10.0 -159.2 126.9 58.2 63.6 86.8
 GLU-243   LEU-244  9.6 7.7 74.7 -32.2 103.4 125.5 -89.1
 LEU-244   PHE-245  5.9 5.2 -21.6 42.4 21.1 39.2 -82.0
 PHE-245   PHE-246  5.1 6.2 -171.1 149.5 75.0 38.4 61.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees