Recombination-Associated Protein Rdgc

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue i Residue i+1 Distance of hinge axis to residue i in conformer 1 (A) Distance of hinge axis to residue i in conformer 2 (A) Change in psi (i) (deg) Change in phi (i+1) (deg) Angle of psi(i) axis to hinge axis conformer 1 (deg) Angle of psi(i) axis to hinge axis conformer 2 (deg) Percentage Progress  ALA-28   SER-29  7.5 7.3 6.4 1.6 127.1 122.4 -39.8  ALA-31   PHE-32  5.8 5.8 -28.4 21.5 15.3 8.8 155.4 Graph shows rotational transition at bending residues and can be used to identify hinge bending residues. Probably only informative for interdomain rotations greater than 20 degrees

Residue i Residue i+1 Distance of hinge axis to residue i in conformer 1 (A) Distance of hinge axis to residue i in conformer 2 (A) Change in psi (i) (deg) Change in phi (i+1) (deg) Angle of psi(i) axis to hinge axis conformer 1 (deg) Angle of psi(i) axis to hinge axis conformer 2 (deg) Percentage Progress  ALA-41   LYS-42  6.0 6.1 21.6 -45.1 146.0 148.6 44.8  GLY-44   TRP-45  2.7 2.8 19.0 -26.7 112.8 114.1 78.3 Graph shows rotational transition at bending residues and can be used to identify hinge bending residues. Probably only informative for interdomain rotations greater than 20 degrees

Residue i Residue i+1 Distance of hinge axis to residue i in conformer 1 (A) Distance of hinge axis to residue i in conformer 2 (A) Change in psi (i) (deg) Change in phi (i+1) (deg) Angle of psi(i) axis to hinge axis conformer 1 (deg) Angle of psi(i) axis to hinge axis conformer 2 (deg) Percentage Progress  ALA-68   ARG-69  3.0 2.8 22.0 -28.8 166.1 158.1 96.5  ARG-69   LYS-70  2.2 2.1 -8.4 14.5 58.2 56.3 -67.6  LYS-70   GLU-71  2.3 2.1 5.6 -11.0 155.9 154.0 61.9 Graph shows rotational transition at bending residues and can be used to identify hinge bending residues. Probably only informative for interdomain rotations greater than 20 degrees

Residue i Residue i+1 Distance of hinge axis to residue i in conformer 1 (A) Distance of hinge axis to residue i in conformer 2 (A) Change in psi (i) (deg) Change in phi (i+1) (deg) Angle of psi(i) axis to hinge axis conformer 1 (deg) Angle of psi(i) axis to hinge axis conformer 2 (deg) Percentage Progress  SER-121   ARG-122  0.8 1.3 -10.3 10.6 78.0 73.7 13.3  ARG-122   PHE-123  3.5 3.3 -0.1 -7.6 6.9 11.0 54.6  PHE-123   SER-124  4.3 4.1 -7.8 16.3 58.4 62.7 115.5 Graph shows rotational transition at bending residues and can be used to identify hinge bending residues. Probably only informative for interdomain rotations greater than 20 degrees