Protein Rdmb

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASP-160   ALA-161  7.6 7.0 -4.5 -8.3 80.1 80.9 12.7
 ALA-161   LEU-162  9.9 9.1 -7.3 26.0 143.2 145.1 38.6
 SER-164   CYS-165  14.2 13.0 156.7 -39.7 97.9 62.7 305.3
 CYS-165   ASP-166  13.8 16.4 32.6 15.7 169.6 126.3 -170.0
 ASP-176   ALA-177  27.6 24.9 -173.5 -39.6 162.2 120.0 -730.2
 ALA-177   TYR-178  26.5 27.4 105.7 -4.0 77.3 45.2 260.3
 TYR-178   ASP-179  27.4 27.7 12.7 10.2 124.8 106.4 -25.8
 ASP-179   TRP-180  30.6 31.1 1.6 0.1 123.6 125.3 -10.0
 TRP-180   SER-181  30.3 31.1 -11.3 6.2 64.6 73.6 0.5
 SER-181   ALA-182  34.1 34.9 -5.2 16.2 98.1 100.3 11.6
 ALA-182   VAL-183  34.7 35.1 -0.1 -13.7 75.2 65.2 0.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-286   ASP-287  16.6 15.9 -21.2 15.3 87.7 82.8 35.5
 ASP-287   ARG-288  13.3 12.8 -32.1 -153.7 67.0 50.3 500.5
 ALA-296   ASP-297  18.6 13.0 153.8 -14.4 105.2 138.1 -553.8
 ARG-298   PHE-299  14.0 13.0 25.0 8.6 45.6 57.5 31.9
 PHE-299   PHE-300  13.8 13.5 -4.5 -5.0 142.0 138.9 -41.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-313   GLY-314  5.2 5.3 -1.2 11.2 113.6 106.7 20.3
 GLY-314   ARG-315  3.7 3.7 -7.6 18.8 137.6 147.1 36.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLU-336   ARG-337  22.2 22.3 -32.4 35.9 107.9 101.8 53.9
 ARG-337   THR-338  22.7 22.9 16.1 23.3 61.1 74.7 84.0
 THR-338   SER-339  20.8 21.4 -21.2 35.8 105.5 153.1 -58.9
 SER-339   GLY-340  22.6 21.5 54.8 -117.6 49.1 79.2 -136.4
 GLY-340   SER-341  22.7 19.8 -1.1 81.9 161.9 157.9 326.8
 SER-341   THR-342  22.5 19.2 8.6 -8.1 67.8 83.8 -5.5
 THR-342   THR-343  24.0 22.3 5.6 -17.9 50.1 82.1 -11.8
 THR-343   LEU-344  21.3 20.9 -22.7 -12.2 64.8 47.6 44.9
 LEU-344   PRO-345  18.5 18.7 27.2 10.3 130.6 160.8 -133.4
 PRO-345   PHE-346  17.6 19.0 60.0 3.0 146.3 109.2 -147.3
 PHE-346   ASP-347  16.3 16.6 -67.8 8.5 80.0 75.9 58.6
 ASP-347   PHE-348  17.8 17.6 10.8 -49.4 80.5 86.7 -5.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees