Leucyl-Trna Synthetase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ILE-176   VAL-177  12.8 12.8 -0.3 0.2 57.1 57.2 -27.8
 VAL-177   LYS-178  9.4 9.4 -0.3 0.7 129.7 129.9 24.0
 LYS-178   GLY-179  6.8 6.8 -0.1 -0.4 64.9 64.9 -11.8
 GLY-179   ALA-180  3.1 3.1 0.1 -0.4 47.1 47.3 0.1
 ALA-180   HIS-181  1.1 1.1 3.3 -0.5 43.1 43.7 66.5
 HIS-181   ARG-182  1.6 1.7 0.8 0.6 44.9 44.6 20.1
 ARG-182   VAL-183  4.6 4.6 0.7 0.3 27.0 27.1 22.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ALA-456   VAL-457  11.4 11.4 -0.3 0.0 159.9 160.1 14.9
 VAL-457   ILE-458  11.3 11.3 0.1 -0.3 60.0 60.1 -30.1
 ILE-458   LYS-459  8.8 8.8 0.7 -1.6 59.1 59.1 -56.4
 LYS-459   ILE-460  6.9 6.9 16.0 -12.9 47.3 47.3 115.6
 ILE-460   ILE-461  5.2 5.2 -3.2 0.0 84.2 84.6 61.1
 ILE-461   HIS-462  3.8 3.8 -0.4 0.2 155.8 155.9 -48.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees