Simian Virus 40

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue i Residue i+1 Distance of hinge axis to residue i in conformer 1 (A) Distance of hinge axis to residue i in conformer 2 (A) Change in psi (i) (deg) Change in phi (i+1) (deg) Angle of psi(i) axis to hinge axis conformer 1 (deg) Angle of psi(i) axis to hinge axis conformer 2 (deg) Percentage Progress  ILE-301   SER-302  2.5 1.7 12.3 -13.8 46.1 39.6 -1.7  SER-302   PHE-303  1.0 1.9 -1.0 6.5 162.1 156.3 11.0  PHE-303   LEU-304  1.7 2.5 30.3 -32.1 80.4 78.0 10.2  LEU-304   LEU-305  4.0 3.1 12.9 -14.1 76.2 71.7 -5.1  LEU-305   SER-306  4.2 3.2 23.8 9.3 27.9 23.3 70.4  SER-306   ASP-307  2.9 1.8 38.0 -8.4 38.1 45.4 57.4 Graph shows rotational transition at bending residues and can be used to identify hinge bending residues. Probably only informative for interdomain rotations greater than 20 degrees