Dihydrodipicolinate Synthase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PHE-17   LYS-18  11.9 11.8 5.1 -7.4 103.7 103.7 24.1
 LYS-18   ASN-19  15.0 14.9 -1.1 8.0 152.1 150.7 186.4
 ASN-19   GLY-20  16.4 16.4 -11.6 13.8 129.1 130.6 62.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLU-24   GLN-25  17.8 17.6 0.5 -5.2 9.9 10.3 -300.1
 GLN-25   SER-26  18.5 18.5 7.5 -4.4 63.3 62.6 313.4
 SER-26   TYR-27  14.9 14.9 1.2 -0.5 85.4 85.9 5.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLU-50   SER-51  6.9 7.0 2.1 -2.2 55.2 56.9 -96.7
 SER-51   ALA-52  10.3 10.5 4.4 -5.2 8.5 9.8 -20.8
 ALA-52   THR-53  8.9 9.0 2.9 -3.0 64.3 62.7 22.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 HIS-59   ARG-60  16.8 16.8 -5.6 3.2 123.0 124.0 -146.7
 ARG-60   THR-61  20.5 20.4 1.0 -2.9 38.7 41.2 -81.8
 THR-61   CYS-62  19.9 19.8 -1.0 1.8 141.7 143.1 144.1
 CYS-62   ILE-63  17.0 16.9 -1.7 1.0 121.2 122.4 -51.2
 ILE-63   GLU-64  19.2 19.1 -0.7 -1.5 122.8 121.5 -98.2
 GLU-64   ILE-65  22.0 22.0 6.1 -1.8 34.2 36.1 89.9
 ILE-65   ALA-66  20.0 20.0 -0.3 0.7 133.6 137.6 27.9
 ALA-66   VAL-67  18.4 18.4 2.0 -0.8 61.8 61.3 86.2
 VAL-67   GLU-68  21.9 22.0 -5.6 5.7 129.6 127.9 126.9
 GLU-68   THR-69  23.3 23.3 -1.6 1.1 146.1 145.8 -218.3
 THR-69   CYS-70  20.4 20.4 3.7 -0.1 49.0 45.7 110.5
 CYS-70   LYS-71  20.5 20.6 4.4 -7.6 69.2 63.8 -158.7
 LYS-71   GLY-72  24.2 24.3 14.3 -3.6 11.9 17.1 715.8
 GLY-72   THR-73  25.4 24.9 7.7 -25.8 55.4 63.4 -591.9
 THR-73   LYS-74  22.1 22.0 0.2 2.4 103.6 105.6 -122.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASN-244   LYS-245  8.9 8.8 0.4 -2.8 36.1 34.8 -46.4
 LYS-245   ILE-246  11.3 11.1 3.4 -0.2 55.0 57.9 128.1
 ILE-246   LEU-247  9.6 9.5 -2.2 2.8 119.3 120.9 55.3
 LEU-247   PHE-248  6.2 6.2 2.0 0.1 28.6 27.5 79.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 SER-279   LYS-280  12.2 12.2 0.6 -2.1 34.8 35.0 -83.1
 LYS-280   GLU-281  14.8 14.7 2.2 -4.8 44.7 44.7 -130.3
 GLU-281   ASN-282  15.6 15.6 3.5 2.8 56.0 58.9 310.7
 ASN-282   PHE-283  12.1 12.1 -0.6 -0.4 123.7 124.7 -47.6
 PHE-283   ALA-284  11.3 11.3 2.6 -8.8 28.3 26.8 -208.0
 ALA-284   LYS-285  14.1 14.0 1.1 7.4 51.9 56.5 347.0
 LYS-285   ILE-286  13.1 13.1 -3.3 0.1 118.5 121.2 -178.5
 ILE-286   GLU-287  9.4 9.4 -4.7 5.4 137.8 142.4 -64.1
 GLU-287   GLU-288  11.0 10.8 -1.1 5.6 148.4 143.7 329.0
 GLU-288   VAL-289  12.9 12.9 -4.2 3.7 119.7 118.8 22.5
 LYS-291   LYS-292  10.0 10.1 -15.8 12.0 141.8 141.4 -187.1
 LYS-292   TYR-293  9.4 9.4 -1.9 0.8 106.8 107.4 -115.0
 TYR-293   LYS-294  5.6 5.6 -6.6 5.5 108.8 109.4 -48.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees