Poly(a)-Specific Ribonuclease Parn

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLU-137   GLU-138  3.8 3.5 23.7 -11.9 88.2 80.6 -89.1
 GLU-138   GLU-139  5.3 5.3 -1.4 5.4 55.3 53.8 -94.8
 GLU-139   ARG-140  8.3 8.2 -6.3 -9.5 17.2 21.2 234.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LYS-259   GLU-260  24.3 23.9 -24.1 23.1 67.3 67.4 15.0
 GLU-260   GLN-261  21.0 20.4 -6.0 -3.6 87.7 93.1 141.9
 GLN-261   GLU-262  19.3 18.9 4.3 -0.7 149.3 137.1 27.5
 GLU-262   GLU-263  21.3 21.0 -8.7 11.7 40.6 33.8 15.3
 GLU-263   LEU-264  19.9 19.8 11.6 -20.9 95.6 97.0 47.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees