Gtp:amp Phosphotransferase Mitochondrial

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ARG-123   LEU-124  2.7 1.5 -8.3 5.3 152.6 143.6 -1.3
 LEU-124   THR-125  2.4 2.3 -9.0 35.5 110.0 100.9 17.5
 THR-125   ALA-126  5.4 4.1 -36.8 -11.1 49.4 56.2 42.5
 ALA-126   ARG-127  5.7 6.0 22.3 11.5 75.3 77.0 -2.7
 ARG-127   TRP-128  7.1 7.1 9.9 -9.3 59.9 59.4 4.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ILE-158   GLN-159  14.3 14.2 13.9 5.9 79.9 82.1 5.1
 GLN-159   ARG-160  10.6 10.4 16.4 -9.4 154.4 144.9 -9.4
 ARG-160   GLU-161  8.6 8.7 -6.4 -9.1 70.6 56.4 18.3
 GLU-161   ASP-162  6.8 7.3 4.3 -20.8 65.4 88.2 2.5
 ASP-162   ASP-163  3.3 4.1 21.0 9.0 21.8 24.9 24.9
 ASP-163   LYS-164  4.7 3.5 59.9 -41.2 87.2 88.2 19.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees