Pyruvate,orthophosphate Dikinase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASN-386   PRO-387  34.1 34.5 -3.7 -8.8 69.7 70.3 162.7
 PRO-387   SER-388  32.9 33.0 3.0 11.4 125.3 117.6 -90.0
 SER-388   ALA-389  36.3 36.4 7.6 -9.7 157.8 173.9 55.1
 ALA-389   TYR-390  35.9 35.8 11.4 1.6 127.8 120.0 -143.3
 TYR-390   LYS-391  33.0 32.9 -10.6 14.7 86.0 88.1 2.7
 LYS-391   ASP-392  35.0 35.0 4.2 -10.0 162.9 150.4 86.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLN-393   VAL-394  31.5 31.0 2.4 -7.4 117.7 121.7 116.9
 VAL-394   ILE-395  30.7 30.6 -20.6 13.9 128.3 124.1 -92.4
 ILE-395   ALA-396  29.4 29.4 -9.8 14.6 60.6 58.8 -98.3
 ALA-396   THR-397  29.3 29.1 -9.5 7.4 13.2 14.9 14.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-399   PRO-400  26.5 26.7 2.7 -15.4 108.7 105.1 241.1
 PRO-400   ALA-401  25.1 25.6 16.5 -20.5 121.1 131.1 137.5
 ALA-401   SER-402  21.9 22.5 9.8 2.0 124.1 121.5 -91.8
 SER-402   PRO-403  20.4 20.9 5.2 -7.0 70.9 70.4 -7.2
 PRO-403   GLY-404  22.8 23.0 1.4 -6.1 113.4 114.3 67.9
 PRO-403   GLY-404  22.8 23.0 1.4 -6.1 113.4 114.3 67.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PRO-403   GLY-404  22.8 23.0 1.4 -6.1 113.4 114.3 67.9
 PRO-403   GLY-404  22.8 23.0 1.4 -6.1 113.4 114.3 67.9
 GLY-404   ALA-405  22.7 22.9 0.8 -2.0 170.9 172.5 37.1
 ALA-405   ALA-406  23.5 23.5 -0.2 6.0 63.8 64.4 -80.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LYS-468   CYS-469  16.0 16.2 -3.0 6.4 110.1 114.5 22.8
 CYS-469   CYS-470  18.9 19.1 -9.7 8.1 113.0 115.4 41.1
 CYS-470   VAL-471  19.2 19.3 3.8 2.7 84.8 83.6 -44.9
 VAL-471   SER-472  22.1 22.2 16.9 -10.0 77.8 81.9 -47.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-499   SER-500  21.3 21.3 7.1 -7.8 160.2 155.9 -9.1
 SER-500   LEU-501  23.1 23.1 8.1 -9.3 126.7 127.5 47.1
 LEU-501   ASN-502  22.9 23.1 4.1 -4.6 149.5 146.7 38.4
 ASN-502   GLY-503  25.0 25.3 0.5 3.0 129.5 127.6 -64.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-506   GLU-507  27.0 27.0 8.0 -2.7 10.0 14.4 98.3
 GLU-507   VAL-508  28.0 28.0 -17.8 16.3 123.2 126.5 -14.3
 VAL-508   ILE-509  25.7 25.8 27.7 -38.5 41.7 46.6 -115.5
 ILE-509   LEU-510  27.2 26.9 -37.6 39.0 141.8 141.5 12.1
 LEU-510   GLY-511  26.0 25.9 5.7 -7.9 81.5 87.4 20.0
 LEU-510   GLY-511  26.0 25.9 5.7 -7.9 81.5 87.4 20.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-510   GLY-511  26.0 25.9 5.7 -7.9 81.5 87.4 20.0
 LEU-510   GLY-511  26.0 25.9 5.7 -7.9 81.5 87.4 20.0
 GLY-511   LYS-512  24.9 24.9 -14.1 0.8 37.7 34.1 290.1
 LYS-512   GLN-513  24.8 24.6 17.2 -3.7 120.8 115.1 -203.0
 GLN-513   PRO-514  27.6 27.5 -0.5 9.3 129.0 125.1 41.1
 GLN-513   PRO-514  27.6 27.5 -0.5 9.3 129.0 125.1 41.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLN-513   PRO-514  27.6 27.5 -0.5 9.3 129.0 125.1 41.1
 GLN-513   PRO-514  27.6 27.5 -0.5 9.3 129.0 125.1 41.1
 PRO-514   LEU-515  28.7 28.6 -10.2 4.4 164.2 162.0 -164.3
 LEU-515   SER-516  27.5 27.0 -8.5 13.7 122.7 123.1 212.9
 SER-516   PRO-517  29.9 29.4 -10.3 12.5 71.1 72.2 -34.3
 SER-516   PRO-517  29.9 29.4 -10.3 12.5 71.1 72.2 -34.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 SER-516   PRO-517  29.9 29.4 -10.3 12.5 71.1 72.2 -34.3
 SER-516   PRO-517  29.9 29.4 -10.3 12.5 71.1 72.2 -34.3
 PRO-517   PRO-518  29.7 29.5 -9.0 -8.8 4.4 8.5 368.3
 PRO-518   ALA-519  28.8 28.4 8.6 3.6 118.6 122.3 -167.3
 ALA-519   LEU-520  31.3 30.7 13.8 -17.9 116.0 105.3 -32.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees