Igm Rf 2A2

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 SER-9   SER-10  13.3 13.3 2.0 0.5 100.1 97.9 -80.1
 SER-10   LEU-11  12.0 12.1 -2.5 -1.9 14.9 14.9 79.0
 LEU-11   SER-12  11.8 11.8 2.7 -7.4 103.0 100.9 202.7
 SER-12   ALA-13  12.4 12.4 -5.0 8.4 23.5 20.0 -166.9
 ALA-13   SER-14  10.4 10.5 5.9 -8.9 97.4 95.5 117.1
 SER-14   VAL-15  10.4 10.4 -0.2 7.6 66.5 60.9 -128.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-104   GLU-105  7.3 7.4 2.8 -1.1 82.6 82.5 94.1
 GLU-105   ILE-106  9.9 9.9 3.1 -4.4 149.4 149.3 7.8
 ILE-106   LYS-107  11.6 11.6 0.3 -3.9 104.9 104.3 127.5
 LYS-107   ARG-108  14.2 14.3 -7.7 12.0 86.9 83.0 67.8
 ARG-108   THR-109  17.5 17.5 6.4 2.9 105.3 106.8 -54.6
 THR-109   VAL-110  21.1 21.1 -1.9 -2.8 147.6 144.8 -75.7
 VAL-110   ALA-111  23.2 23.3 -2.1 -3.8 117.5 118.4 -86.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees