Glutamate Receptor, Ionotropic Kainate 1

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 LEU-108   GLY-109  4.6 4.2 0.3 9.2 38.5 37.5 32.9
 GLY-109   ILE-110  1.3 1.0 -45.2 29.1 63.9 67.1 56.3
 ILE-110   SER-111  2.5 2.9 -0.4 -7.5 69.4 72.6 7.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 GLY-208   GLY-209  10.5 10.7 17.1 -24.7 93.3 84.9 -24.7
 GLY-209   LEU-210  8.9 8.1 20.3 -0.9 95.4 106.9 -55.2
 LEU-210   ILE-211  5.4 4.7 -14.0 29.6 23.4 24.0 -34.3
 ILE-211   ASP-212  3.9 4.3 173.8 157.3 100.5 130.0 -18.2
 ASP-212   SER-213  0.6 1.1 148.0 -101.7 66.2 57.0 123.1
 SER-213   LYS-214  3.7 3.3 -12.7 58.3 88.3 85.6 34.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 LYS-249   TRP-250  10.2 10.4 -14.4 13.6 86.4 86.8 4.2
 TRP-250   TRP-251  8.0 7.8 -7.3 -0.6 104.1 98.9 -1.6
 TRP-251   ARG-252  4.8 5.1 -12.3 -13.2 43.5 56.7 79.2
 ARG-252   GLY-253  5.3 6.3 23.7 -106.8 128.8 149.5 278.1
 GLY-253   ASN-254  2.6 4.6 16.6 78.4 152.9 115.4 -294.8
 ASN-254   GLY-255  3.7 4.2 -125.7 31.3 82.3 116.2 -29.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees