Tata-Binding Protein

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 THR-66   LEU-67  8.1 8.7 -3.5 -9.2 23.6 29.6 163.3
 LEU-67   GLN-68  5.8 6.0 -7.1 -10.5 71.2 66.4 53.5
 GLN-68   ASN-69  7.8 8.1 15.2 -5.9 121.5 133.7 -97.7
 ASN-69   ILE-70  5.9 6.1 -11.5 1.5 96.0 92.9 -9.3
 ASN-69   ILE-70  5.9 6.1 -11.5 1.5 96.0 92.9 -9.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASN-69   ILE-70  5.9 6.1 -11.5 1.5 96.0 92.9 -9.3
 ASN-69   ILE-70  5.9 6.1 -11.5 1.5 96.0 92.9 -9.3
 ILE-70   VAL-71  3.3 3.3 -9.6 8.9 140.1 142.0 17.8
 VAL-71   ALA-72  3.8 3.7 -2.0 6.2 83.5 87.1 -46.9
 ALA-72   THR-73  6.4 6.1 8.4 1.2 44.8 42.1 60.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLN-158   ASN-159  4.0 3.9 7.7 7.8 84.8 82.0 -0.7
 ASN-159   ILE-160  1.7 1.5 -7.0 3.4 142.2 145.2 -49.5
 ILE-160   VAL-161  2.3 2.3 -6.6 6.9 82.6 85.3 -13.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees