Atp-Dependent RNA Helicase Dob1
(All numbering and residues are taken from first PDB file)
Bending Residue Dihedral Analysis
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
GLY-634
ILE-635
19.3
22.2
30.8
22.9
87.3
63.9
38.4
ASP-639
GLU-640
8.6
10.7
-46.4
-15.5
111.7
152.2
-114.5
GLU-640
GLU-641
6.4
9.6
6.7
50.1
116.9
99.9
-10.7
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
VAL-719
ASN-720
21.2
21.7
21.6
-3.9
71.6
70.1
14.2
ASN-720
VAL-721
20.7
21.1
-38.0
32.3
43.2
44.3
16.4
LEU-734
LEU-735
10.9
19.7
140.4
-71.1
118.2
138.7
-137.6
LEU-735
LYS-736
13.0
16.9
8.7
33.8
54.9
82.9
-19.8
LYS-736
PRO-737
15.1
16.5
-32.2
-81.4
48.4
95.7
-702.7
PRO-737
PHE-738
18.5
13.4
156.7
-14.1
118.1
50.5
442.0
PHE-738
ASN-739
18.5
13.0
96.0
8.4
87.7
79.5
143.8
ASN-739
PRO-740
15.0
12.7
-101.8
123.5
30.9
132.1
-8.0
PRO-740
THR-741
14.1
10.3
40.2
18.2
92.8
10.5
168.1
THR-741
LEU-742
10.7
10.7
-127.5
-3.9
107.0
125.8
-60.7
PRO-743
GLU-744
6.7
7.4
-117.3
-2.1
55.6
60.1
305.3
GLU-744
GLY-745
3.4
9.4
-176.7
-58.3
87.7
56.6
-20.2
GLY-745
ILE-746
5.7
6.5
72.4
-114.2
126.9
126.0
69.3
ILE-746
ARG-747
7.9
8.8
23.5
-152.8
163.7
115.7
-161.8
ARG-747
PRO-748
7.9
9.3
-103.6
7.2
121.3
68.6
-17.4
ARG-747
PRO-748
7.9
9.3
-103.6
7.2
121.3
68.6
-17.4
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
ARG-747
PRO-748
7.9
9.3
-103.6
7.2
121.3
68.6
-17.4
ARG-747
PRO-748
7.9
9.3
-103.6
7.2
121.3
68.6
-17.4
PRO-748
ALA-749
10.2
11.5
-9.0
29.7
91.4
128.9
25.5
ALA-749
GLU-750
12.2
11.6
15.2
-1.7
27.4
39.9
49.5
GLU-750
GLU-751
11.8
13.3
-122.0
-30.0
111.8
94.7
194.6
GLU-751
GLY-752
14.4
16.8
11.3
24.5
119.3
45.0
-576.4
GLY-752
GLU-753
17.1
16.9
108.2
29.9
162.3
145.9
555.1
GLU-753
LYS-754
16.5
17.7
-15.3
20.9
84.8
80.8
-0.8
LYS-754
SER-755
18.5
19.8
-16.0
40.7
76.7
53.5
-11.3
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
ASP-829
VAL-830
19.3
17.4
6.8
-6.4
142.3
140.3
-6.8
LYS-856
HIS-857
12.9
11.7
-81.8
-24.8
119.9
73.9
-45.4
HIS-857
ASP-858
12.6
12.7
49.7
-7.6
15.1
40.4
102.9
ASP-858
LEU-859
12.4
13.2
16.9
-4.0
87.9
86.4
-11.1
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees