Glutamate Receptor, Ionotropic Kainate 1

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 THR-107   LEU-108  7.9 7.5 14.9 -8.8 110.2 113.8 -16.3
 LEU-108   GLY-109  4.4 3.8 -14.8 27.4 138.2 138.5 30.4
 GLY-109   ILE-110  1.7 1.6 -46.5 31.0 62.1 67.2 25.9
 ILE-110   SER-111  3.5 3.2 -5.0 -4.6 60.9 67.7 36.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 GLY-208   GLY-209  11.6 11.7 21.6 -28.1 98.5 89.4 -20.7
 GLY-209   LEU-210  10.2 9.4 2.7 11.2 103.2 113.0 -29.1
 LEU-210   ILE-211  6.8 6.2 1.7 20.3 157.0 158.6 -77.1
 ILE-211   ASP-212  5.9 6.2 179.6 149.0 108.9 133.5 40.3
 ASP-212   SER-213  2.9 3.3 132.8 -101.0 70.9 59.9 72.3
 SER-213   LYS-214  4.1 3.9 -9.2 8.2 79.7 76.0 26.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 TRP-251   ARG-252  5.1 5.4 -6.4 -2.9 35.2 38.9 30.0
 ARG-252   GLY-253  5.2 5.5 -2.7 -17.6 53.8 48.9 47.2
 GLY-253   ASN-254  2.2 2.4 -19.7 33.1 24.6 30.6 -68.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees