Lethal Factor

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 SER-593   ASN-594  15.7 9.8 -8.3 -1.3 77.9 144.3 -5.6
 ASN-594   ILE-595  15.0 10.7 -18.5 -10.0 62.8 91.8 7.2
 ILE-595   VAL-596  12.2 11.4 29.2 125.7 49.6 145.4 -12.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-601   ILE-602  9.4 12.6 163.9 10.8 45.1 147.8 -40.8
 ILE-602   LEU-603  8.3 11.8 85.5 -13.7 101.2 107.1 -45.3
 LEU-603   ASN-604  5.6 9.9 11.0 -68.7 133.5 112.9 32.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PHE-631   THR-632  6.8 0.6 -121.8 -22.7 77.7 101.3 22.8
 THR-632   ASP-633  10.2 4.1 -18.2 35.6 76.9 104.3 -8.3
 ASP-633   ILE-634  13.7 7.5 -124.3 41.2 37.8 154.7 12.4
 ILE-634   THR-635  14.0 9.8 -14.7 -60.8 43.2 115.3 -30.8
 THR-635   LEU-636  12.6 8.4 -30.9 -42.1 82.1 138.1 91.1
 LEU-636   PRO-637  9.0 11.1 145.6 -40.2 126.6 48.0 -9.3
 PRO-637   ASN-638  10.1 10.0 166.0 -18.4 61.7 53.4 -63.0
 ASN-638   ILE-639  12.4 12.8 145.6 -52.5 40.2 14.9 51.0
 ILE-639   ALA-640  9.8 13.3 17.6 -53.4 115.4 61.3 -8.7
 ALA-640   GLU-641  10.8 16.1 179.1 -82.5 97.5 22.8 20.2
 GLU-641   GLN-642  7.6 16.7 180.0 -0.9 149.3 55.8 -85.8
 GLN-642   TYR-643  6.4 18.8 175.8 6.8 131.6 77.6 9.4
 TYR-643   THR-644  9.6 21.1 18.8 -2.8 100.8 22.2 5.4
 THR-644   HIS-645  11.4 20.2 -11.3 32.9 53.6 94.6 -3.6
 HIS-645   GLN-646  8.9 17.0 -8.3 21.5 37.9 65.1 -8.9
 GLN-646   ASP-647  7.9 19.6 -128.9 -96.6 66.7 122.9 8.5
 ASP-647   GLU-648  11.0 22.7 133.9 22.9 125.7 58.5 8.2
 GLU-648   ILE-649  9.4 23.1 -165.9 13.5 122.5 89.4 -59.0
 ILE-649   TYR-650  10.8 26.7 -17.5 -12.7 74.5 47.0 10.9
 TYR-650   GLU-651  8.8 27.8 -12.4 34.1 114.4 84.4 8.2
 GLU-651   GLN-652  5.5 25.7 -1.4 -20.7 170.1 124.4 -9.6
 GLN-652   VAL-653  7.2 28.1 -146.2 -4.4 101.2 67.7 82.9
 VAL-653   HIS-654  7.3 31.1 -155.4 66.0 151.7 13.3 -1.6
 HIS-654   SER-655  9.8 29.4 -165.1 67.9 97.2 68.9 -67.7
 SER-655   LYS-656  10.0 30.6 -38.8 -23.7 172.4 106.6 -29.9
 LYS-656   GLY-657  10.4 34.4 150.4 121.2 69.2 55.0 159.2
 GLY-657   LEU-658  6.8 35.6 160.7 60.9 137.8 104.3 -113.2
 LEU-658   TYR-659  3.4 38.2 175.0 -2.1 64.1 139.2 106.1
 TYR-659   VAL-660  2.1 36.5 -39.1 60.7 45.4 86.6 -19.7
 VAL-660   PRO-661  2.8 32.8 -111.2 -43.7 98.7 30.2 -82.4
 PRO-661   GLU-662  6.4 32.0 39.3 -47.5 86.6 114.4 -0.4
 GLU-662   SER-663  8.2 33.1 175.6 25.7 28.7 58.2 116.8
 SER-663   ARG-664  7.8 31.6 115.5 -105.3 38.7 79.2 -2.9
 ARG-664   SER-665  6.7 34.0 62.5 82.0 50.4 118.6 -47.2
 SER-665   ILE-666  3.5 34.8 154.3 61.5 101.2 61.0 39.9
 ILE-666   LEU-667  0.4 35.7 168.6 65.8 82.3 76.5 -31.8
 LEU-667   LEU-668  3.6 32.3 173.9 89.4 81.9 139.0 -74.4
 LEU-668   HIS-669  6.4 30.6 -156.5 21.4 98.2 72.9 -37.2
 HIS-669   GLY-670  9.9 32.4 -151.4 -18.5 119.2 129.4 104.2
 GLY-670   PRO-671  12.4 31.6 52.5 -34.5 114.9 89.2 3.0
 PRO-671   SER-672  15.9 28.0 -24.0 18.0 42.6 33.9 5.2
 SER-672   LYS-673  15.4 28.1 162.3 81.6 76.1 87.4 -20.7
 LYS-673   GLY-674  16.3 30.3 116.7 11.7 126.7 100.5 -35.7
 GLY-674   VAL-675  14.4 29.0 -115.1 -40.4 68.6 83.0 32.2
 VAL-675   GLU-676  16.3 25.5 -8.1 -178.3 126.3 26.9 -18.8
 GLU-676   LEU-677  19.0 24.8 -72.7 -36.6 146.4 84.4 -48.2
 LEU-677   ARG-678  17.1 21.5 0.0 -47.0 136.6 139.1 -17.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees