Replication Protein E1

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-369   ARG-370  10.2 10.4 -8.3 14.4 133.2 137.6 50.1
 ARG-370   ALA-371  9.8 9.8 13.8 -7.1 74.6 74.3 79.8
 ALA-371   GLU-372  7.7 7.5 2.1 -8.0 132.6 133.2 44.8
 GLU-372   THR-373  6.2 5.9 -13.7 29.8 97.1 93.7 -0.3
 GLU-372   THR-373  6.2 5.9 -13.7 29.8 97.1 93.7 -0.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLU-372   THR-373  6.2 5.9 -13.7 29.8 97.1 93.7 -0.3
 GLU-372   THR-373  6.2 5.9 -13.7 29.8 97.1 93.7 -0.3
 THR-373   GLN-374  5.0 5.9 -1.7 -19.4 33.2 44.8 115.9
 GLN-374   ALA-375  4.4 4.7 2.1 -4.3 91.3 87.2 -23.6
 ALA-375   LEU-376  1.6 1.5 13.6 -9.5 70.6 58.9 14.4
 LEU-376   SER-377  1.5 1.7 19.6 -16.8 127.5 119.7 -35.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees