Diphtheria Toxin ()

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ARG-377   PRO-378  21.1 20.7 12.4 5.2 80.2 88.2 0.6
 PRO-378   ALA-379  19.3 18.4 25.4 66.9 94.0 108.2 -11.1
 ALA-379   TYR-380  15.7 14.9 -30.1 28.0 85.8 142.7 -3.3
 TYR-380   SER-381  13.2 12.3 12.8 16.8 159.1 97.7 -7.7
 SER-381   PRO-382  12.8 9.7 -51.1 -8.2 92.9 51.9 2.5
 PRO-382   GLY-383  9.7 7.7 153.6 -121.6 62.4 75.3 15.6
 GLY-383   HIS-384  9.6 5.4 114.0 42.0 29.6 58.4 82.1
 HIS-384   LYS-385  11.1 1.8 -1.8 -156.3 129.4 133.3 -67.6
 LYS-385   THR-386  9.3 1.5 165.3 -70.9 110.8 86.0 -14.4
 THR-386   GLN-387  5.6 3.2 147.4 5.7 156.3 168.8 -89.2
 GLN-387   PRO-388  6.7 5.2 -8.9 -7.3 48.5 49.7 2.9
 PRO-388   PHE-389  4.7 3.6 -5.8 6.4 40.2 45.4 4.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees