DNA Polymerase IV
(All numbering and residues are taken from first PDB file)
Bending Residue Dihedral Analysis
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
ASP-9
TYR-10
10.1
10.2
-1.4
-5.0
63.7
62.1
91.3
TYR-10
PHE-11
6.8
7.0
0.5
3.2
109.7
108.7
-45.5
PHE-11
TYR-12
8.8
9.0
-3.3
4.2
69.2
68.8
75.3
TYR-12
ALA-13
7.2
7.2
-12.4
6.2
132.6
132.6
-118.1
ALA-13
GLN-14
5.2
5.1
5.9
-7.0
44.2
42.0
-14.5
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
LEU-23
LYS-24
8.8
8.8
-7.0
6.8
123.1
126.1
35.6
LYS-24
GLY-25
6.7
6.6
1.8
-3.0
60.0
60.2
30.5
GLY-25
LYS-26
4.3
4.1
-6.1
-0.7
54.7
54.5
122.7
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
VAL-28
VAL-29
4.0
3.9
6.9
-7.3
39.3
37.4
-75.7
VAL-29
VAL-30
3.1
3.2
-8.6
6.3
138.2
140.8
38.2
VAL-30
CYS-31
3.2
3.3
1.6
-3.7
31.4
32.3
-73.4
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
VAL-32
PHE-33
3.4
3.2
8.1
-7.0
122.3
122.1
9.6
PHE-33
SER-34
6.5
6.2
25.8
-24.8
170.5
169.5
-70.9
SER-34
GLY-35
5.7
5.9
-8.4
-6.4
54.2
57.6
330.5
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
SER-40
GLY-41
9.3
9.3
13.0
-10.8
101.5
105.0
-51.8
GLY-41
ALA-42
5.8
5.8
6.0
-16.3
139.7
136.1
218.4
ALA-42
VAL-43
4.3
4.4
-8.5
11.1
36.5
42.2
-127.0
VAL-43
ALA-44
2.8
2.7
-0.3
3.8
93.2
95.0
-7.6
ALA-44
THR-45
1.7
1.7
5.4
-0.1
146.5
147.3
-171.6
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
ALA-71
VAL-72
8.9
9.0
15.0
-11.6
52.9
59.1
142.2
VAL-72
TYR-73
8.8
8.7
-7.2
2.5
150.2
147.3
-97.5
TYR-73
LEU-74
8.2
7.9
-1.2
8.1
114.6
114.8
70.4
LEU-74
PRO-75
8.2
8.0
1.9
-2.6
32.7
27.9
-43.6
PRO-75
MET-76
7.9
7.9
-1.2
0.9
84.5
86.5
-4.1
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
ARG-242
LYS-243
20.5
20.7
9.3
-13.8
165.4
164.2
63.8
LYS-243
SER-244
20.7
20.6
-4.9
4.0
47.8
49.2
70.2
SER-244
ILE-245
17.4
17.2
-3.5
2.9
118.8
119.1
-5.1
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees