Translation Initiation Factor Eif-2b, Delta Subunit

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LYS-110   ALA-111  2.8 2.8 -51.4 9.4 55.4 59.6 85.2
 ALA-111   LEU-112  0.7 0.6 17.3 -13.4 75.1 76.5 6.1
 LEU-112   GLU-113  3.8 3.0 -1.9 13.2 140.3 146.1 31.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLU-309   PHE-310  10.0 8.8 20.4 -8.7 63.8 43.4 26.8
 PHE-310   GLY-311  9.7 8.8 15.2 -111.2 41.8 43.2 -207.6
 GLY-311   TRP-312  12.7 11.9 -55.7 -7.6 162.2 118.1 -166.9
 TRP-312   ALA-313  10.4 13.6 143.9 125.6 56.3 51.6 -196.2
 ALA-313   LEU-314  11.9 11.2 178.9 2.7 25.9 8.8 599.4
 LEU-314   LYS-315  10.4 10.1 -8.9 16.2 132.9 136.8 35.2
 LYS-315   TYR-316  13.1 13.4 21.3 -39.2 105.3 89.0 30.1
 TYR-316   THR-317  14.3 14.4 -7.2 10.1 96.1 101.7 16.4
 THR-317   GLU-318  14.0 13.8 -10.8 18.6 24.2 28.5 -18.9
 GLU-318   PRO-319  13.3 13.4 -18.2 2.6 64.1 74.1 20.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees