Trna Nucleotidyltransferase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ALA-10   LEU-11  2.2 2.1 8.6 3.8 41.1 41.9 91.6
 LEU-11   GLU-12  0.9 0.8 7.1 -12.8 101.1 99.0 7.0
 GLU-12   LEU-13  4.1 3.7 4.8 -7.5 74.5 77.2 -27.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 THR-130   PRO-131  5.9 6.4 8.0 -0.1 93.2 91.5 24.9
 PRO-131   PHE-132  2.8 3.3 -3.0 -4.9 88.9 95.8 -2.5
 PHE-132   HIS-133  2.7 3.1 14.6 -1.9 22.8 22.9 120.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees