Kinesin

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASN-152   LEU-153  5.8 6.0 5.6 10.3 38.4 37.4 101.4
 LEU-153   SER-154  5.5 5.8 -9.4 19.0 146.3 146.9 89.8
 SER-154   VAL-155  4.6 5.0 1.3 -11.0 59.7 66.0 -66.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-165   LYS-166  6.5 6.4 -3.5 -21.0 94.7 87.7 -2.9
 LYS-166   GLY-167  8.7 8.8 17.3 3.8 24.3 32.5 156.1
 GLY-167   CYS-168  11.0 11.1 -4.7 -3.7 139.6 151.0 -50.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-268   ALA-269  18.7 18.2 -7.8 -0.9 94.1 95.5 -31.1
 ALA-269   GLU-270  22.3 21.9 12.4 -16.7 28.7 41.1 -49.4
 GLU-270   GLY-271  22.4 22.5 -9.1 9.6 141.0 151.5 4.0
 GLY-271   SER-272  21.2 20.4 -3.8 4.8 124.3 118.6 12.5
 SER-272   THR-273  18.1 18.2 -1.3 10.2 100.7 106.8 66.0
 THR-273   TYR-274  15.3 15.1 1.1 -0.9 117.1 125.5 10.0
 TYR-274   VAL-275  12.8 13.1 2.1 -2.0 163.1 167.0 -1.4
 VAL-275   PRO-276  12.6 12.6 -8.3 2.9 68.4 61.5 33.8
 PRO-276   TYR-277  10.9 11.2 -3.9 0.4 37.4 44.4 3.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASP-288   SER-289  12.1 12.3 -38.7 66.7 122.5 118.9 134.1
 SER-289   LEU-290  14.4 14.5 -49.0 62.3 97.8 71.1 -26.6
 LEU-290   GLY-291  14.6 14.9 166.0 178.1 157.3 155.9 91.6
 GLY-291   GLY-292  16.7 15.4 -174.7 -178.6 51.8 63.0 10.2
 GLY-292   ASN-293  17.2 14.9 -40.3 38.9 95.4 97.5 60.7
 ASN-293   CYS-294  19.8 17.1 48.8 -49.7 16.2 14.5 -9.6
 CYS-294   ARG-295  19.4 18.3 -5.8 -1.6 117.8 107.6 -18.1
 ARG-295   THR-296  21.6 21.3 -45.9 42.1 133.1 147.2 -53.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees