Adenylate Kinase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASP-114   GLU-115  2.8 4.2 -8.4 8.4 137.7 139.0 -14.6
 GLU-115   VAL-116  3.8 5.2 -4.4 0.5 107.7 110.0 6.2
 VAL-116   VAL-117  1.1 1.5 3.1 -15.4 134.0 129.8 13.8
 VAL-117   ILE-118  2.7 1.9 6.0 5.6 82.8 89.0 -4.7
 ILE-118   GLU-119  5.6 5.4 0.4 -1.5 37.8 37.1 -6.9
 GLU-119   ARG-120  5.9 5.8 9.0 -8.4 98.1 95.1 11.6
 ARG-120   LEU-121  6.8 5.9 -5.0 2.8 54.9 51.4 10.2
 LEU-121   SER-122  8.8 7.8 -6.4 -3.7 106.8 99.1 -2.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 TYR-165   ARG-166  1.6 1.0 11.7 -13.0 94.3 85.8 7.9
 ARG-166   GLU-167  3.6 4.8 4.9 4.5 28.9 23.7 37.6
 GLU-167   GLN-168  4.4 5.6 11.9 -1.4 62.2 56.7 -6.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees