Transcription Factor Nf-Kb P65
(All numbering and residues are taken from first PDB file)
Bending Residue Dihedral Analysis
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
GLN-29
ARG-30
3.7
3.7
68.3
-58.3
15.3
11.7
99.1
ARG-30
GLY-31
4.0
4.6
25.1
-12.0
58.8
59.9
59.5
GLY-31
MET-32
5.9
6.9
-18.9
6.0
116.5
120.6
-39.5
MET-32
ARG-33
6.3
7.0
-4.1
10.0
127.8
117.4
17.7
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
PHE-184
ASP-185
1.4
1.3
10.5
-13.1
30.6
29.5
25.4
ASP-185
ASN-186
2.3
2.3
-55.7
42.9
110.7
116.2
-8.7
ASN-186
ARG-187
2.0
2.4
12.7
-5.8
23.9
15.1
59.6
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees