Glutamate Receptor Subunit 2

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LYS-531   PRO-532  8.0 8.2 -5.9 13.9 152.0 149.0 10.2
 PRO-532   PHE-533  5.8 5.8 -5.7 3.3 149.3 146.3 -10.1
 PHE-533   MET-534  6.7 7.0 6.8 -7.6 49.3 45.6 -11.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LYS-762   GLY-763  4.7 4.8 -7.9 -14.0 55.9 58.5 112.9
 GLY-763   TYR-764  2.2 2.3 3.5 -10.6 94.8 90.4 -63.5
 TYR-764   GLY-765  2.0 2.1 0.1 -0.1 69.4 69.9 67.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees