Glutamate Receptor 2

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 SER-108   LEU-109  4.6 5.2 -13.2 1.6 51.6 54.1 25.7
 LEU-109   GLY-110  2.2 2.7 13.7 8.9 55.9 58.0 58.9
 GLY-110   ILE-111  3.6 3.8 -5.3 -2.8 52.9 48.4 22.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-215   ASP-216  8.1 8.3 -0.8 -5.0 43.2 42.7 46.7
 ASP-216   SER-217  5.6 5.5 -6.6 5.5 103.8 101.5 39.4
 SER-217   LYS-218  2.5 2.3 -11.9 -7.5 86.4 75.3 28.2
 LYS-218   GLY-219  4.9 5.1 15.9 3.9 65.4 51.3 58.9
 GLY-219   TYR-220  6.9 7.5 7.9 -13.1 65.6 58.0 -38.6
 TYR-220   GLY-221  10.0 10.4 1.9 -1.1 114.8 111.6 3.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees