Protein (Pyruvate Kinase)

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PRO-87   GLU-88  6.0 5.1 2.3 32.1 73.5 72.0 69.4
 GLU-88   ILE-89  2.7 2.6 -32.5 17.1 40.3 46.2 63.7
 ILE-89   ARG-90  1.4 1.4 -8.0 0.2 101.9 96.3 -25.8
 ARG-90   THR-91  5.2 5.0 -5.7 -7.3 45.2 45.0 24.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ARG-175   GLY-176  9.7 9.3 15.6 3.0 94.2 90.9 -43.8
 GLY-176   VAL-177  6.2 5.8 -3.1 17.0 88.2 93.4 -29.2
 VAL-177   ASN-178  5.5 5.5 1.9 -8.7 109.7 117.9 60.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees