Chimera Protein Of C-C Chemokine Receptor Type 5 And Rubredoxin

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-222   ARG-223  5.3 4.7 55.5 -12.4 169.4 161.6 -55.9
 ARG-223   MET-1001  6.2 5.0 -158.5 10.4 63.1 68.6 110.7
 MET-1001   LYS-1002  2.5 4.5 135.5 -23.0 90.9 95.9 50.1
 LYS-1002   LYS-1003  3.8 3.1 -8.3 30.3 32.1 39.8 -21.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLU-1053   GLU-1054  9.6 10.8 178.3 44.6 72.8 111.3 40.4
 GLU-1054   GLU-227  7.0 9.0 -167.9 0.7 58.8 54.1 279.3
 GLU-227   LYS-228  8.8 5.8 -131.1 10.6 73.6 24.2 -331.8
 LYS-228   LYS-229  6.5 7.8 -111.1 48.7 66.6 57.7 38.0
 LYS-229   ARG-230  9.5 9.7 -23.8 6.0 105.9 66.9 11.2
 ARG-230   HIS-231  8.7 7.1 -2.1 26.9 42.0 38.2 -19.8
 HIS-231   ARG-232  6.2 5.0 -50.8 7.4 25.4 35.7 61.4
 ARG-232   ASP-233  8.6 8.1 -17.8 1.7 61.8 66.7 18.7
 ASP-233   VAL-234  10.3 9.2 14.5 -9.9 119.4 117.0 3.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees