Precursor Of Periplasmic Sugar Receptor

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue i Residue i+1 Distance of hinge axis to residue i in conformer 1 (A) Distance of hinge axis to residue i in conformer 2 (A) Change in psi (i) (deg) Change in phi (i+1) (deg) Angle of psi(i) axis to hinge axis conformer 1 (deg) Angle of psi(i) axis to hinge axis conformer 2 (deg) Percentage Progress  THR-111   THR-112  6.6 6.2 17.1 -27.5 72.4 75.7 2.3  THR-112   ASP-113  3.2 2.6 -7.7 -7.3 51.8 62.9 47.3  ASP-113   ASN-114  1.1 0.9 3.8 10.3 50.7 46.8 28.2  ASN-114   VAL-115  4.5 4.0 -4.8 5.4 82.6 84.3 -4.9 Graph shows rotational transition at bending residues and can be used to identify hinge bending residues. Probably only informative for interdomain rotations greater than 20 degrees

Residue i Residue i+1 Distance of hinge axis to residue i in conformer 1 (A) Distance of hinge axis to residue i in conformer 2 (A) Change in psi (i) (deg) Change in phi (i+1) (deg) Angle of psi(i) axis to hinge axis conformer 1 (deg) Angle of psi(i) axis to hinge axis conformer 2 (deg) Percentage Progress  THR-244   VAL-245  4.0 4.2 3.5 -5.3 36.5 39.6 -4.0  VAL-245   ALA-246  3.0 3.2 24.0 -47.5 89.5 83.1 9.1  ALA-246   GLN-247  1.0 0.9 15.6 42.9 29.2 33.9 96.0 Graph shows rotational transition at bending residues and can be used to identify hinge bending residues. Probably only informative for interdomain rotations greater than 20 degrees

Residue i Residue i+1 Distance of hinge axis to residue i in conformer 1 (A) Distance of hinge axis to residue i in conformer 2 (A) Change in psi (i) (deg) Change in phi (i+1) (deg) Angle of psi(i) axis to hinge axis conformer 1 (deg) Angle of psi(i) axis to hinge axis conformer 2 (deg) Percentage Progress  LEU-280   VAL-281  5.1 4.4 -37.1 27.8 139.1 131.6 15.2  VAL-281   ASP-282  6.1 6.4 11.1 -2.7 63.6 53.7 6.1  ASP-282   SER-283  5.2 6.3 -13.0 35.4 147.7 151.6 44.4  SER-283   ILE-284  3.0 4.3 3.1 22.5 62.2 46.1 50.8  ILE-284   LEU-285  5.1 5.8 10.9 -26.9 42.2 49.9 -20.0  LEU-285   VAL-286  5.8 6.3 -9.8 15.5 152.7 155.1 14.3  VAL-286   THR-287  5.3 5.2 -2.4 -4.9 126.6 128.4 -3.1 Graph shows rotational transition at bending residues and can be used to identify hinge bending residues. Probably only informative for interdomain rotations greater than 20 degrees