Glutamate Receptor 2

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 TYR-16   VAL-17  9.3 9.3 -1.9 -0.8 71.6 72.2 28.1
 VAL-17   MET-18  12.6 12.6 0.2 -1.3 162.8 162.5 -8.5
 MET-18   MET-19  12.8 13.0 -5.7 -0.3 63.3 66.0 208.4
 MET-19   LYS-20  15.4 15.8 2.1 0.9 121.9 128.4 -150.2
 LYS-20   LYS-21  15.4 15.4 -3.4 0.3 13.4 17.6 106.1
 LYS-21   ASN-22  14.8 14.8 1.5 1.0 113.9 114.2 -23.9
 ASN-22   HIS-23  18.6 18.4 2.5 1.1 54.3 53.1 12.0
 HIS-23   GLU-24  19.9 20.0 2.4 2.2 105.9 108.7 -9.1
 GLU-24   MET-25  22.7 22.9 -2.1 1.7 81.6 85.3 -45.5
 MET-25   LEU-26  24.3 24.3 -2.7 -0.8 149.5 155.4 -82.4
 LEU-26   GLU-27  24.3 24.2 -0.2 -3.8 128.1 123.5 -35.7
 GLU-27   GLY-28  26.1 25.9 3.2 -1.3 15.7 15.1 24.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 LEU-109   GLY-110  6.0 6.2 -0.5 4.4 110.7 110.0 18.8
 GLY-110   ILE-111  9.7 9.8 -1.6 -1.7 37.5 36.5 98.3
 ILE-111   SER-112  12.9 13.0 0.3 0.3 113.7 116.0 -92.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 LEU-215   ASP-216  15.1 15.3 -0.2 -0.3 34.6 33.4 39.4
 ASP-216   SER-217  13.0 13.2 -1.5 -0.9 88.9 88.8 4.8
 SER-217   LYS-218  9.5 9.6 -1.4 -6.5 80.5 76.9 37.7
 LYS-218   GLY-219  8.5 8.4 4.5 2.1 78.2 71.3 67.9
 GLY-219   TYR-220  6.4 6.5 2.2 2.0 69.6 70.2 -62.4
 TYR-220   GLY-221  8.0 8.2 -1.6 1.2 50.3 51.2 -3.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 LEU-250   LYS-251  8.8 8.8 -0.8 -1.4 66.9 67.6 2.3
 LYS-251   ASN-252  5.1 5.0 0.9 0.6 137.9 133.0 4.9
 ASN-252   LYS-253  7.1 6.9 0.9 -0.9 146.0 149.2 -36.2
 LYS-253   TRP-254  8.6 8.4 -1.0 0.7 53.4 52.3 -9.0
 TRP-254   TRP-255  6.0 5.8 -0.5 0.5 72.2 74.0 7.1
 TRP-255   TYR-256  3.0 2.8 -2.4 -1.6 54.6 57.7 61.2
 TYR-256   ASP-257  6.1 6.0 -0.5 2.4 54.1 55.4 -26.5
 ASP-257   LYS-258  8.9 8.8 0.7 0.8 144.5 150.7 -37.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees