Pyruvate Kinase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LYS-68   GLY-69  12.9 13.0 -6.3 19.4 89.6 86.2 -136.3
 GLY-69   PRO-70  9.3 9.4 -2.4 -1.6 125.1 132.8 170.0
 PRO-70   GLU-71  8.7 8.6 1.5 1.2 111.0 111.6 -61.9
 GLU-71   ILE-72  11.5 11.4 9.5 -10.3 51.3 47.7 115.9
 ILE-72   ARG-73  13.6 13.7 11.6 -16.2 87.7 94.6 -49.7
 ARG-73   THR-74  17.0 17.1 -7.7 10.7 129.7 132.3 23.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-158   ASN-159  17.7 17.6 -6.2 13.3 132.0 132.6 21.9
 ASN-159   LEU-160  16.0 16.2 -5.7 10.9 95.7 94.4 299.7
 LEU-160   PRO-161  16.3 16.1 -7.3 10.7 144.7 150.5 -65.3
 PRO-161   GLY-162  15.6 15.8 8.8 -25.0 88.6 94.2 -92.2
 GLY-162   VAL-163  14.6 14.5 21.8 -23.0 146.3 146.0 30.9
 VAL-163   SER-164  14.0 13.9 4.9 -7.8 98.3 100.2 -76.7
 SER-164   ILE-165  11.1 10.9 -11.6 9.0 25.1 17.3 26.2
 ILE-165   ALA-166  9.9 9.9 2.1 -10.4 119.8 116.4 39.2
 ALA-166   LEU-167  8.1 7.9 19.6 -2.8 116.0 117.9 -135.9
 LEU-167   PRO-168  6.2 6.0 3.6 -8.9 77.2 82.4 -153.1
 PRO-168   ALA-169  2.5 2.3 -13.1 25.3 146.5 143.1 304.4
 ALA-169   LEU-170  2.2 2.1 21.9 -32.6 99.8 107.4 -114.4
 LEU-170   ALA-171  5.4 5.0 -21.0 9.6 40.5 34.8 185.3
 ALA-171   GLU-172  7.7 7.3 -27.6 27.9 46.8 54.3 -66.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees