RNA Polymerase-Binding Transcription Factor Card

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue i Residue i+1 Distance of hinge axis to residue i in conformer 1 (A) Distance of hinge axis to residue i in conformer 2 (A) Change in psi (i) (deg) Change in phi (i+1) (deg) Angle of psi(i) axis to hinge axis conformer 1 (deg) Angle of psi(i) axis to hinge axis conformer 2 (deg) Percentage Progress  ASP-60   VAL-61  1.4 6.4 132.9 -40.0 120.9 65.8 15.7  VAL-61   VAL-62  2.4 2.8 158.8 24.4 110.1 135.2 57.3  VAL-62   GLY-63  4.1 3.4 -179.1 -161.7 42.3 65.7 -4.4 Graph shows rotational transition at bending residues and can be used to identify hinge bending residues. Probably only informative for interdomain rotations greater than 20 degrees