Mhc Class I H-2dd Heavy Chain

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 SER-2   HIS-3  11.0 11.0 -121.5 -32.7 79.0 78.1 154.4
 HIS-3   SER-4  8.4 8.2 -2.7 5.6 79.7 73.8 -37.3
 SER-4   LEU-5  9.2 9.1 -7.6 5.1 92.2 90.2 12.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 TYR-171   LEU-172  5.9 6.0 -20.2 22.5 96.8 89.6 17.7
 LEU-172   LYS-173  2.6 2.8 24.6 -17.0 145.3 142.1 -19.7
 LYS-173   ASN-174  1.6 2.3 -34.6 45.9 78.2 99.2 36.3
 ASN-174   GLY-175  3.8 5.1 -19.4 17.3 138.7 135.7 7.0
 GLY-175   ASN-176  3.9 4.1 3.4 3.5 63.1 83.8 14.7
 ASN-176   ALA-177  2.2 2.4 -5.0 0.6 114.4 113.7 -14.6
 ALA-177   THR-178  5.9 6.1 28.9 -40.9 16.5 2.9 -31.6
 THR-178   LEU-179  5.8 5.4 -12.0 12.8 127.7 113.3 -28.8
 LEU-179   LEU-180  2.3 1.9 86.6 -108.0 83.6 98.4 50.9
 LEU-180   ALA-181  4.4 4.6 64.5 -57.9 54.1 71.6 17.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees